Hi All, Reposting Thomas' question from earlier -- what is a good converter from Thermo's .msf to TPP suitable files (i.e. pepXML)?
I tried to find it on the list, and the discussion let me to here: https://github.com/itmat/thermo_msf/blob/master/README.rdoc#readme But I am unable to successfully install/use this. Any help on this converter/installation? Thanks a lot, Christine ----- From: Thomas DV <[email protected]> Date: Sun, 5 Dec 2010 08:43:28 -0800 (PST) Local: Sun, Dec 5 2010 12:43 pm Subject: proteome discoverer 1.1 to pepXML Reply to author | Forward | Print | Individual message | Show original | Report this message | Find messages by this author Hello everybody, I'm new to this group and in fact rather new to proteome data analysis as a whole. We are using Thermo's proteome discoverer at the lab, which gives .msf output files. I wanted to try the Ascore program to see whether this could help in localizing the phosphorylation site in peptides we measured. but this requires pepXML input. I've tried to find a converter for .msf into pepXML but it doesn't seem to exist, is that right? is there any possibility to extract a SEQUEST .out file from within proteome discoverer or any work-around to create pepXML from proteome discoverer results through other data output formats? thanks kindly for any help! Thomas student, University of Antwerp, Belgium -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
