Huan,

What is the actual path and file permisions to the pep.shtml and prot.shtml
files on your system?

-Joe


On Mon, Apr 11, 2011 at 10:42 AM, Huan Wang <[email protected]> wrote:

> Hi,
>
> I installed TPP v4.4 VUVUZELA rev 1, Build 201101181419 (linux) on
> Ubuntu 10.04-64bit. After running the tutorial data (raft5051) in
> peptide prophet, I got "Command Successful" message. However, when I
> click the link of output shtml, I got "404 Not Found, The requested
> URL /data/testinteract.pep.xml was not found on this server". I
> checked the path and both pep.shtml and prot.shtml are there. There
> are also corresponding .xml and .xsl files. I can open the generated
> pep.xml file but not prot.xml files (same error).
>
> My guess is I did not set up apache2 correctly because another copy of
> TPP runs on Windows can display the result without problem.
>
> My apache2 setting is: /etc/apache2/sites-available/mytpp:
> SetEnv WEBSERVER_ROOT /usr/local/tpp
>        # directory to store data for web browser viewing
>        ScriptAlias /tpp/data "/usr/local/tpp/data"
>        <Directory "/usr/local/tpp/data">
>                AllowOverride None
>                Options Indexes FollowSymLinks Includes
>                Order allow,deny
>                Allow from all
>        </Directory>
>
> My /usr/local/tpp/cgi-bin/tpp_gui setting is
>
> my $www_root    = readconfig('www_root',$ENV{'WEBSERVER_ROOT'}.'/');
> # full path to web server root
> my $data_dir    = readconfig('data_dir',"${www_root}data/");
>
> They matched to each other. I also tried to change the path to /usr/
> local/tpp/ISB/data, but got the same thing.
>
> Can anyone help me out? Thanks
>
> Huan
>
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