Thanks for that ... I've subscribed to that group now and will repost my question
Ira On Apr 14, 4:15 am, Joseph Slagel <[email protected]> wrote: > Hi Ira, > > I noticed no one was able to answer your question. You might be able to get > a better response from the omssa folks, they are quite responsive and their > mailing list is athttp://www.ncbi.nlm.nih.gov/mailman/listinfo/omssausers. > > -Joe > > > > > > > > On Thu, Apr 7, 2011 at 8:16 PM, ira cooke <[email protected]> wrote: > > Hi, > > > I've recently noticed that none of my search results produced using > > omssa contain retention time information. The info is certainly there > > in my mgf files .. for example; > > > BEGIN IONS > > TITLE=mt350-CD25_neg_BB1_01_4461.d_raw_corrected_pk.7.7.2 > > RTINSECONDS=485.4048 > > PEPMASS=773.725830078125 0 > > CHARGE=2 > > 579.2604337 2.000903606 > > 579.4351404 1.497543812 > > 645.7024682 4.425733566 > > 678.6623602 3.99043107 > > 1305.827148 1.813325286 > > 1428.320387 2.378391981 > > END IONS > > > I was just wondering if this is simply because omssa chooses not to > > write this (it's listed as optional in the pepXML.xsd ). I had a > > quick search in the omssa source code and it looks like it ignores the > > retention time altogether. Then again .. it was just a quick look ... > > so hopefully I've missed something. > > > I've tried producing the pepXML using omssa2pepXML .. and also using > > the omssa -op flag. > > > Anyway ... hopefully I am wrong and this is possible ... I'd very much > > like to include this info in my files > > > Thanks > > Ira > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
