Hi, I've recently noticed that none of my search results produced using omssa contain retention time information. The info is certainly there in my mgf files .. for example;
BEGIN IONS TITLE=mt350-CD25_neg_BB1_01_4461.d_raw_corrected_pk.7.7.2 RTINSECONDS=485.4048 PEPMASS=773.725830078125 0 CHARGE=2 579.2604337 2.000903606 579.4351404 1.497543812 645.7024682 4.425733566 678.6623602 3.99043107 1305.827148 1.813325286 1428.320387 2.378391981 END IONS I was just wondering if this is simply because omssa chooses not to write this (it's listed as optional in the pepXML.xsd ). I had a quick search in the omssa source code and it looks like it ignores the retention time altogether. Then again .. it was just a quick look ... so hopefully I've missed something. I've tried producing the pepXML using omssa2pepXML .. and also using the omssa -op flag. Anyway ... hopefully I am wrong and this is possible ... I'd very much like to include this info in my files Thanks Ira -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
