Luis Thanks. Just one follow-on. If the database is specified in the <result>2XML executable, what role does the -D option play in xinteract? Does it override the pepXML entry, or is it for something else? thanks Simon Michnowicz
On Apr 30, 6:06 am, Luis Mendoza <[email protected]> wrote: > Hi Simon, > This is unlikely to work, given that the pepXML format and other tools tend > to assume a single entry for the database field. One possible way around > this is to create a single database by concatenating the entries of the > target databases used in the Mascot search, and specify this in the -D > parameter. > > Hope this helps! > --Luis > > On Thu, Apr 28, 2011 at 12:57 AM, Simon Michnowicz < > > > > > > > > [email protected]> wrote: > > Dear Group, > > the new Mascot Server allows users to search multiple sequence > > databases in a single search. > > I was wondering if there were any issues with Mascot2Xml converting > > the '.dat' result file of such a search? > > (I am yet to produce such a .dat file, but will it ignore any entry > > not found in the database specified by the -D parameter?) > > > thanks > > Simon Michnowicz > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]. > > For more options, visit this group at > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
