I'm sure David will update PeptideProphet to recognize the different search_engine attribute that your pep.xml files contain. But another option for you if you want to use PeptideProphet right now is to actually use the TPP's Sqt2XML program to translate your .sqt files to .pep.xml. It's apparent that you're using an mspire tool to do this conversion now.
On Wed, Jun 22, 2011 at 5:28 PM, Kinfai Au <[email protected]> wrote: > I find a function "Sqt2XML" in TPP-4.4.1, so I converted my SQT file > to pepXML and started peptideprophet. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
