Sure... here it is...
Make sure you have "tmp" directory under root path.. else TPP hangs during
"PepXMLViewer"
Let me know if it helps....
tpp_gui.pl : But, it is recommended to update tpp_gui_config.pl, for the
time being you can try in tpp_gui.pl
my $base_dir = readconfig('base_dir',"c:\\Inetpub\\tpp-bin\\"); # full
path to this file
my $tmp_dir = readconfig('tmp_dir',"/tmp/"); #
keep log files here
my $tpp_bin_url = readconfig('tpp_bin_url',"/tpp-bin");
my $tpp_url = readconfig('tpp_url',"$tpp_bin_url/tpp_gui.pl");
# : Changed wwwroot from "c" to "d" as we want data directory to new
external drive.
my $www_root = readconfig('www_root',"d:/Inetpub/wwwroot/"); # full path
to web server root
my $data_dir = readconfig('data_dir',"${www_root}ISB/data/"); #
full path to data directory top-level
my $log_file = readconfig('log_file',"${tmp_dir}tpp_web.log"); #
full path to log file
my $users_dir = readconfig('users_dir',"${base_dir}users/");
# full path to users directory (passwds etc)
my $crypt_key = readconfig('crypt_key','isbTPPspc');
my $pipeline = readconfig('pipeline','Sequest'); # set to default
[Sequest Mascot SpectraST Tandem] more to come...
my $rawfile = readconfig('rawfile','raw'); # set to default [raw
wiff ddir rawdir]
my $debug = readconfig('debug',0); # set to 0 (zero) to
suppress debug output to log file
my $doMzXMLGzip = readconfig('doMzXMLGzip',0); # set to 1 to tell
converters to gzip their mzxml output
*Apache config:httpd.conf*
#
# Begin settings for the Trans Proteomic Pipeline
#
# Add 5-hour timeout
Timeout 18000
AddType text/html .shtml
AddHandler server-parsed .shtml
SetEnv WEBSERVER_ROOT D:/Inetpub/wwwroot
SetEnv WEBSERVER_URL http://<servername>:81
Alias /tpp-bin "C:/Inetpub/tpp-bin"
<Directory "C:/Inetpub/tpp-bin">
Options Indexes MultiViews ExecCGI
AllowOverride None
Order allow,deny
Allow from all
AddHandler cgi-script .cgi .pl
ScriptInterpreterSource Registry
PassEnv WEBSERVER_ROOT
PassEnv WEBSERVER_TMP
</Directory>
Alias /ISB "D:/Inetpub/wwwroot/ISB"
Alias /isb "D:/Inetpub/wwwroot/ISB"
<Directory "D:/Inetpub/wwwroot/ISB">
Options Indexes MultiViews Includes ExecCGI
AllowOverride None
Order allow,deny
Allow from all
AddType text/html .shtml
AddHandler server-parsed .shtml
PassEnv WEBSERVER_ROOT
PassEnv WEBSERVER_TMP
</Directory>
On Thu, Jul 7, 2011 at 1:13 PM, Joseph Slagel <
[email protected]> wrote:
> Also, if you could provide some details on your changes to the apache
> config file, tpp_gui.pl, and the errors you are getting in the apache logs
> that'd help.
>
> -Joe
>
>
> On Thu, Jul 7, 2011 at 4:54 AM, Vishal Swaroop <[email protected]>wrote:
>
>> Hi Eiko,
>>
>> May be this might help....
>> http://groups.google.com/group/spctools-discuss/browse_thread/thread/aadaec6df4e21572/fd62dc82266d3d8a?hl=en&lnk=gst&q=val+data+drive#fd62dc82266d3d8a
>>
>> Check the last post.... I did it some time back.....
>>
>> Thanks
>> Vishal
>>
>>
>> On Thu, Jul 7, 2011 at 2:43 AM, furukie <[email protected]>wrote:
>>
>>> Hi,
>>>
>>> I have been trying to change my data directory to a larger storage on
>>> both a network storage and another drive on my local computer (which
>>> has TPP installed). I've followed step-by-step using the SPC-wiki
>>> guide on change of data directory as well as solutions from users in
>>> this group who previously had the same problems. However, none of them
>>> worked for me!
>>>
>>> When I tried to change to a network data storage, even after making
>>> some changes to httpd.confg and tpp_gui.pl as others suggested, my
>>> apache refuse to start up. When using the http://localhost:1441/ , I
>>> get a permission error or the server is busy, etc.
>>>
>>> Then I tried another local drive (D:/) on my computer, make changes,
>>> apache worked fine, but whenever I try to get to petunia, I get a "500
>>> Internal Server Error"...
>>>
>>> I have also created a clone from my C:/ to both D:/ and the network
>>> drive (Z:/) and mad a tmp folder,etc... Still nothing.
>>>
>>> I am currently using TPP v4.4 VUVUZELA rev 1, Build 201010121551
>>> (MinGW), have administrator rights to the computer, had no problems
>>> accessing the localhost when I stuck to C:/, but get loads of problems
>>> while trying to change the drive. I have to change drives as TPP
>>> conversion of .d to .mzXML files is taking a large amount of storage
>>> space.
>>>
>>> Please give me some guidance to this problem as I am not a programmer
>>> and do not fully understand the error logs or the technicalities of
>>> the computer system..
>>>
>>> Many thanks,
>>> Eiko
>>>
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