spctools-discuss  

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• • Re: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
  • RE: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Eric Deutsch
  • Re: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
• [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!' Mike Rightmire
  • Re: [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!' Luis Mendoza
  • RE: [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!' Eric Deutsch
• [spctools-discuss] No rule to make target `/usr/local/tpp/bin/crypt', needed by `install'. Stop. Mike Rightmire
  • Re: [spctools-discuss] No rule to make target `/usr/local/tpp/bin/crypt', needed by `install'. Stop. Luis Mendoza
• [spctools-discuss] prevent xinteract from creating output? Jesse
  • Re: [spctools-discuss] prevent xinteract from creating output? Luis Mendoza
• Re: [spctools-discuss] TPP update paths, return code 512, printscreen attached michaela . filiou
• [spctools-discuss] TPP 5.0 Compilation problem on Linux(es), TARGET/ pwiz Robert
  • Re: [spctools-discuss] TPP 5.0 Compilation problem on Linux(es), TARGET/ pwiz Luis Mendoza
• Re: [spctools-discuss] Comet search not working in TPP; return code: 256 Luis Mendoza
  • Re: [spctools-discuss] Comet search not working in TPP; return code: 256 Francesca Barry
• [spctools-discuss] Problems installing TPP 5.0 on Linux Cedar McKay
  • Re: [spctools-discuss] Problems installing TPP 5.0 on Linux Luis Mendoza
  • Re: [spctools-discuss] Problems installing TPP 5.0 on Linux Cedar McKay
  • Re: [spctools-discuss] Problems installing TPP 5.0 on Linux Luis Mendoza
• [spctools-discuss] msconvert not working with TPP 5.0 on windows Cedar McKay
  • Re: [spctools-discuss] msconvert not working with TPP 5.0 on windows Luis Mendoza
  • Re: [spctools-discuss] msconvert not working with TPP 5.0 on windows Cedar McKay
• [spctools-discuss] TPP update paths error, return code 512 michaela . filiou
• [spctools-discuss] update paths, command failed, return code:512 Michaela Filiou
• [spctools-discuss] Spectra assignment in libra/peptideprophet Veit Schwaemmle
  • Re: [spctools-discuss] Spectra assignment in libra/peptideprophet Luis Mendoza
  • Re: [spctools-discuss] Spectra assignment in libra/peptideprophet Veit Schwaemmle
• [spctools-discuss] Data file on a network drive? Chris Barnes
  • Re: [spctools-discuss] Data file on a network drive? Luis Mendoza
  • Re: [spctools-discuss] Data file on a network drive? Vis Sw
  • Re: [spctools-discuss] Data file on a network drive? Chris Barnes
  • Re: [spctools-discuss] Data file on a network drive? Vis Sw
• Re: [spctools-discuss] Query regarding searching in Comet in TPP Jimmy Eng
• [spctools-discuss] ProteinPilot-Search -> PepXML -> PeptideProphet Ivan Silbern
  • Re: [spctools-discuss] ProteinPilot-Search -> PepXML -> PeptideProphet David Shteynberg
• RE: [spctools-discuss] Error while conversion of files Eric Deutsch
  • Re: [spctools-discuss] Error while conversion of files Joel Christie
  • RE: [spctools-discuss] Error while conversion of files Eric Deutsch
  • RE: [spctools-discuss] Error while conversion of files Eric Deutsch
  • Re: [spctools-discuss] Error while conversion of files Luis Mendoza
  • Re: [spctools-discuss] Error while conversion of files Jimmy Eng
• [spctools-discuss] PeptideProphetParser error on Kojak searches Van Kelly
  • Re: [spctools-discuss] PeptideProphetParser error on Kojak searches David Shteynberg
• [spctools-discuss] SQT file to text file gaurav saxena
  • Re: [spctools-discuss] SQT file to text file Jimmy Eng
  • Re: [spctools-discuss] SQT file to text file gaurav saxena
  • Re: [spctools-discuss] SQT file to text file Jimmy Eng
• [spctools-discuss] pepxml to mzid file conversion Francesca Barry
  • Re: [spctools-discuss] pepxml to mzid file conversion Robert Winkler
  • [spctools-discuss] Re: pepxml to mzid file conversion Francesca Barry
• [spctools-discuss] Spectrast slow processing with .msp file under Linux Jianqiao Shen
  • RE: [spctools-discuss] Spectrast slow processing with .msp file under Linux Eric Deutsch
  • [spctools-discuss] Re: Spectrast slow processing with .msp file under Linux Jianqiao Shen
  • RE: [spctools-discuss] Re: Spectrast slow processing with .msp file under Linux Eric Deutsch
• [spctools-discuss] RT and RTCAT options in PeptideProphet Ali
  • Re: [spctools-discuss] RT and RTCAT options in PeptideProphet David Shteynberg
  • Re: [spctools-discuss] RT and RTCAT options in PeptideProphet Ali
• [spctools-discuss] query on TPP(X!Tandem) PRATIP SAHA
• [spctools-discuss] Is QualScore still shipped with/supported by the TPP? Jason Winget
  • RE: [spctools-discuss] Is QualScore still shipped with/supported by the TPP? Eric Deutsch
  • Re: [spctools-discuss] Is QualScore still shipped with/supported by the TPP? Jason
• [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
  • Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution David Shteynberg
  • RE: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Eric Deutsch
  • Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
  • Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
  • RE: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Eric Deutsch
  • Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
• [spctools-discuss] PeptideProphet Probability vs. Posterior Error Probability (How to compare) Ali
  • Re: [spctools-discuss] PeptideProphet Probability vs. Posterior Error Probability (How to compare) David Shteynberg
  • Re: [spctools-discuss] PeptideProphet Probability vs. Posterior Error Probability (How to compare) Ali
• [spctools-discuss] DatabaseParser error HFaz
  • Re: [spctools-discuss] DatabaseParser error David Shteynberg
• [spctools-discuss] How does CLIPPER work Cedric Leduc
  • [spctools-discuss] Re: How does CLIPPER work uadk
• [spctools-discuss] Protein Prophet - Probability and Xpress Bindiya Sachdev
• Re: [spctools-discuss] Return code : 65280 David Shteynberg
• [spctools-discuss] TPP-Analyze Proteins Bindiya Sachdev
• [spctools-discuss] DiscoFilter Kamal Mandal
  • Re: [spctools-discuss] DiscoFilter David Shteynberg
• [spctools-discuss] No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
  • Re: [spctools-discuss] No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
  • Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis M
• [spctools-discuss] Unable to access xml file via webserver For TPP5 on Ubuntu 16.04 Roden Luo
  • Re: [spctools-discuss] Unable to access xml file via webserver For TPP5 on Ubuntu 16.04 Luis Mendoza
  • Re: [spctools-discuss] Unable to access xml file via webserver For TPP5 on Ubuntu 16.04 Roden Luo
• [spctools-discuss] Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Roden Luo
  • [spctools-discuss] Re: Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Roden Luo
  • Re: [spctools-discuss] Re: Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Jimmy Eng
  • Re: [spctools-discuss] Re: Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Roden Luo
• [spctools-discuss] conversion of iProphet data for submission to PRIDE Adam Oberstein
• [spctools-discuss] TPP v5.0 Installation Error on Linux Ali
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Jean-Christophe Ducom
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Jean-Christophe Ducom
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Jean-Christophe Ducom
  • [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
• [spctools-discuss] PTMProphet Problems in TPP 5.0.0 [email protected]
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 Veit Schwaemmle
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 Jason Winget
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 Jason Winget
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
  • Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
  • [spctools-discuss] Re: PTMProphet Problems in TPP 5.0.0 Veit Schwaemmle
  • Re: [spctools-discuss] Re: PTMProphet Problems in TPP 5.0.0 David Shteynberg
• [spctools-discuss] Proteome Discoverer 2.0 exported pep.xml does not work with PeptideProphet Ali
  • [spctools-discuss] Re: Proteome Discoverer 2.0 exported pep.xml does not work with PeptideProphet Le Picard Marine
• [spctools-discuss] TPP 5.0.0 Release is now available Luis Mendoza
• [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
  • Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
• [spctools-discuss] Bug in XML encoding in Mascot2XML Josh Eckels
  • Re: [spctools-discuss] Bug in XML encoding in Mascot2XML Luis Mendoza
• [spctools-discuss] Question About iprophet/Spectral library Ali
  • Re: [spctools-discuss] Question About iprophet/Spectral library 钟传奇
  • Re: [spctools-discuss] Question About iprophet/Spectral library Ali
  • Re: [spctools-discuss] Question About iprophet/Spectral library 钟传奇
  • RE: [spctools-discuss] Question About iprophet/Spectral library Eric Deutsch
  • Re: [spctools-discuss] Question About iprophet/Spectral library Ali
  • Re: [spctools-discuss] Question About iprophet/Spectral library Ali
  • [spctools-discuss] Re: Question About iprophet/Spectral library Ali
  • Re: [spctools-discuss] Re: Question About iprophet/Spectral library David Shteynberg
  • Re: [spctools-discuss] Re: Question About iprophet/Spectral library Ali
  • Re: [spctools-discuss] Re: Question About iprophet/Spectral library David Shteynberg
  • Re: [spctools-discuss] Re: Question About iprophet/Spectral library Ali
• [spctools-discuss] Decoy database issue Min Huang
  • Re: [spctools-discuss] Decoy database issue Luis Mendoza
• [spctools-discuss] Proteome Discoverer 2.0 - result files Fernanda Salvato
  • [spctools-discuss] Re: Proteome Discoverer 2.0 - result files Jason Winget
  • [spctools-discuss] Re: Proteome Discoverer 2.0 - result files Fernanda Salvato
• [spctools-discuss] TPP 4.8.0 compile problem with boost library on CentOS 6.8 joe2323
• [spctools-discuss] Does SpectraST use Retention Time in it's search? Ali
  • Re: [spctools-discuss] Does SpectraST use Retention Time in it's search? David Shteynberg
  • Re: [spctools-discuss] Does SpectraST use Retention Time in it's search? Ali
• [spctools-discuss] Problem when Creating a library in Spectrast Ali
  • [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
  • RE: [spctools-discuss] Re: Problem when Creating a library in Spectrast Eric Deutsch
  • RE: [spctools-discuss] Re: Problem when Creating a library in Spectrast Eric Deutsch
  • Re: [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
  • Re: [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
  • RE: [spctools-discuss] Re: Problem when Creating a library in Spectrast Eric Deutsch
  • Re: [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
• [spctools-discuss] basic problems about X!tandem database search 陳胤中
• [spctools-discuss] same peptide IDs with different RT value zeyu sun
• [spctools-discuss] pepXML: aminoacid_modification elements in search_summary Eric Deutsch
  • RE: [spctools-discuss] pepXML: aminoacid_modification elements in search_summary Michael Hoopmann
  • [spctools-discuss] Re: pepXML: aminoacid_modification elements in search_summary Harald Barsnes
  • Re: [spctools-discuss] Re: pepXML: aminoacid_modification elements in search_summary Jimmy Eng
  • Re: [spctools-discuss] Re: pepXML: aminoacid_modification elements in search_summary Amit Yadav
  • Re: [spctools-discuss] Re: pepXML: aminoacid_modification elements in search_summary Marc Vaudel
• [spctools-discuss] Multi core analysis Eslam Nouri
  • RE: [spctools-discuss] Multi core analysis Eric Deutsch
  • Re: [spctools-discuss] Multi core analysis Jimmy Eng
  • Re: [spctools-discuss] Multi core analysis Eslam Nouri
  • Re: [spctools-discuss] Multi core analysis Jimmy Eng
  • Re: [spctools-discuss] Multi core analysis Eslam Nouri
  • Re: [spctools-discuss] Multi core analysis Jimmy Eng
  • Re: [spctools-discuss] Multi core analysis Brian Hampton
• [spctools-discuss] MassWolf conversion to ANDIMS (netCDF) Ray Bacala
  • RE: [spctools-discuss] MassWolf conversion to ANDIMS (netCDF) Eric Deutsch
• [spctools-discuss] pepXML question on modified_peptide attribute Timo Sachsenberg
  • Re: [spctools-discuss] pepXML question on modified_peptide attribute David Shteynberg
• [spctools-discuss] Problem analyzing spectrast search results with PeptideProphet mcqueen . p
• [spctools-discuss] TPP 4.8 running error -- internal server error Tao Jinsheng
• [spctools-discuss] Centroiding raw files acquired with QExactive for SpectraST library creation Craig Mageean
• [spctools-discuss] XPRESS Ratio "-1" me094316
• [spctools-discuss] LIBRA Quantification-Fold change value calculation Vijay Kumar
• [spctools-discuss] Inclusion of Decoy sequences in Target Database sequences Vijay Kumar
• [spctools-discuss] Mayu fails with dir argument to -A or -B James Johnson

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