Hi Florian, On your command line, it should just be "/path/to/tandem parameter.xml" The parameter.xml file has to contain the following info: - your search parameters (or link to default xml file) - some path to your mzXML file - some path to your the taxonomy.xml file - some path to your output (result_file.tandem)
Try setting up a search using the petunia interface. That will generate the parameter.xml and taxonomy.xml files. Now you can use these files to try the command line: /path/to/tandem parameter.xml Hope this helps... Bjorn -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
