Hi, I do not think the pep.xml from PD is useable by TPP. Scaffold can use PD .msf format and I know some others expressed interest in converters for the various PD outputs but never saw any movement forward for the PD xml format. A search of this group will come up w/ many related threads.
On Dec 24, 3:48 pm, WoA <[email protected]> wrote: > PeptideProphet or iProphet is not working with the pep.xml files > generated by Proteome Discoverer v. 1.3. Did anybody face this > problem already? Are there some known issues regarding this? > > I'm using (TPP v4.4 VUVUZELA rev 1, Build 201010121551 (MinGW)). > > Thanks in Advance -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
