Hi,
Firstly, I'm using *TPP v4.5 RAPTURE rev 2, Build 201202071404 (linux) *I've tried running protein prophet three different ways, with different results. The first way, I analyse peptides without choosing to run interprophet. Then I run proteinprophet on the interact.pep.xml file. It runs fine, no complaints. But when I try to view the file, I get this error: Error loading stylesheet: Parsing an XSLT stylesheet failed. The second way, I analyze peptides without choosing to run interprophet. Then I run interprophet on the single interact.pep.xml file, and then proteinprophet on the interact.iproph.pep.xml, marking "input is from Iprophet". Again, viewing the results I get Error loading stylesheet: Parsing an XSLT stylesheet failed. The third way is the same as the second way excpet I also check "pregenerate html file" (in the hopes of bypassing the XSLT error. During the run I see the following output, and [Mon Jun 25 14:06:19 2012] EXECUTING: /usr/local/tpp/bin/protxml2html.pl -file /usr/local/tpp/data/ValidationSet/0000/interact.prot.xml HTML OUTPUT: Writing results to html file: /usr/local/tpp/data/ValidationSet/0000/interact.prot.html runtime error: file /usr/local/tpp/data/ValidationSet/0000/interact.prot.xsl line 197 element param Unexpected XSLT element 'param'. runtime error: file /usr/local/tpp/data/ValidationSet/0000/interact.prot.xsl line 197 element A Variable 'mypep' has not been declared. xmlXPathCompiledEval: evaluation failed Done! END OUTPUT View interact.pep.xml gives the same XSLT error, and viewing the interact.pep.html shows truncated output for a single protein. If I log in to the TPP server and view the interact.pep.xml files using less/cat, all the info seems to be there. Thanks, James -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/AFCK1OF9_FoJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
