spctools-discuss

Messages by Date

2018/11/21 RE: [spctools-discuss] How to set number of cores/threads/RAM in TPP Eric Deutsch
2018/11/21 Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue: Robert
2018/11/20 [spctools-discuss] How to set number of cores/threads/RAM in TPP Gunjan Pandey
2018/11/20 Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue: David Shteynberg
2018/11/20 Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue: Robert Winkler
2018/11/20 RE: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue: Eric Deutsch
2018/11/20 [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue: Robert
2018/11/19 Re: [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/19 RE: [spctools-discuss] Linux version of TPP Eric Deutsch
2018/11/19 Re: [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/19 RE: [spctools-discuss] Linux version of TPP Eric Deutsch
2018/11/19 Re: [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/18 RE: [spctools-discuss] Linux version of TPP Eric Deutsch
2018/11/17 Re: [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/16 Re: [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp Luis Mendoza
2018/11/16 [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Robert
2018/11/15 Re: [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/15 RE: [spctools-discuss] Linux version of TPP Eric Deutsch
2018/11/15 Re: [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/15 RE: [spctools-discuss] Linux version of TPP Eric Deutsch
2018/11/15 [spctools-discuss] Linux version of TPP Kamal Mandal
2018/11/14 [spctools-discuss] Simple protXML to tsv converter (Python3) Robert
2018/11/14 RE: [spctools-discuss] Percolator stopped working using Kojak result files Michael Hoopmann
2018/11/14 RE: [spctools-discuss] Running TPP/Petunia GUI with Docker Eric Deutsch
2018/11/14 RE: [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp Eric Deutsch
2018/11/14 Re: [spctools-discuss] MSFragger: peptide prophet extended mass model alastair.skeffington via spctools-discuss
2018/11/13 Re: [spctools-discuss] Percolator stopped working using Kojak result files Gabriella Gellen
2018/11/13 Re: [spctools-discuss] MSFragger: peptide prophet extended mass model David Shteynberg
2018/11/13 [spctools-discuss] MSFragger: peptide prophet extended mass model alastair.skeffington via spctools-discuss
2018/11/12 RE: [spctools-discuss] Percolator stopped working using Kojak result files Michael Hoopmann
2018/11/10 Re: [spctools-discuss] Mascot2XML: decoys alastair.skeffington via spctools-discuss
2018/11/08 [spctools-discuss] Percolator stopped working using Kojak result files Gabriella Gellen
2018/11/08 Re: [spctools-discuss] Mascot2XML: decoys David Shteynberg
2018/11/08 [spctools-discuss] Mascot2XML: decoys alastair.skeffington via spctools-discuss
2018/11/05 [spctools-discuss] convert prot.xml to EXCEL with biocontainers/tpp Robert
2018/11/05 [spctools-discuss] Problems running xinteract in TPP5.1.0 JeBu42
2018/10/30 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/10/23 Re: [spctools-discuss] Running TPP/Petunia GUI with Docker Darryl Davis
2018/10/22 Re: [spctools-discuss] Running TPP/Petunia GUI with Docker Robert Winkler
2018/10/22 RE: [spctools-discuss] Running TPP/Petunia GUI with Docker Eric Deutsch
2018/10/22 [spctools-discuss] Running TPP/Petunia GUI with Docker Robert
2018/10/13 [spctools-discuss] How to persive the multiple identified phospho peptide on the protein information Syed Azmal Ali
2018/10/12 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/10/09 [spctools-discuss] PeptideProphet Using Decoy Peptides to build the machine learning model but reject for selection davisharif
2018/10/04 [spctools-discuss] novor2xml questions Emma Whittington
2018/10/02 Re: [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak Alex Zelter
2018/10/02 Re: [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak David Shteynberg
2018/10/02 [spctools-discuss] Can't exec "tpp_models.pl" TPP/kojak Alex Zelter
2018/10/02 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/10/02 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/09/27 Re: [spctools-discuss] Kojak Kamal Mandal
2018/09/27 RE: [spctools-discuss] Kojak Michael Hoopmann
2018/09/27 [spctools-discuss] Kojak Kamal Mandal
2018/09/27 [spctools-discuss] Kojak FDR analysis Kamal Mandal
2018/09/27 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Felipe da Veiga Leprevost
2018/09/27 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
2018/09/27 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Felipe da Veiga Leprevost
2018/09/27 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
2018/09/27 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Felipe da Veiga Leprevost
2018/09/14 Re: [spctools-discuss] Re: Convert mgf to mzML/mzXML Chambers, Matthew
2018/09/14 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/09/14 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/09/13 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/09/13 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/09/13 [spctools-discuss] Re: HELP PLEASE: InterPro .xml results importing into TPP pipeline? alastair.skeffington via spctools-discuss
2018/09/13 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/09/09 [spctools-discuss] Re: Convert mgf to mzML/mzXML Adam Rabalski
2018/09/07 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam Rabalski
2018/09/07 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/09/05 [spctools-discuss] HELP PLEASE: InterPro .xml results importing into TPP pipeline? Robyn Leigh Smith
2018/09/05 [spctools-discuss] InterPro protein.xml file to TPP or ProteomeDiscoverer prot.xml file Robyn Leigh Smith
2018/09/05 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/09/04 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/09/04 [spctools-discuss] Re: analysing PTMprophet output Adam Rabalski
2018/09/03 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity David Shteynberg
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity David Shteynberg
2018/08/31 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/31 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/08/31 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/31 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/30 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/30 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/08/30 [spctools-discuss] LibraPeptideParser double free or corruption (GNU/Linux) - TPP v5.2.0-b1 Jhoira Sakura
2018/08/30 [spctools-discuss] Mapping disulfide bonds using Kojak Eduardo Kitano
2018/08/30 Re: [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity David Shteynberg
2018/08/30 [spctools-discuss] error with html display: XML parsing error: XML or text declaration not at start of entity Adam Rabalski
2018/08/30 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/29 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/08/29 Re: [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/29 Re: [spctools-discuss] Re: Mascot2XML issues David Shteynberg
2018/08/29 [spctools-discuss] Re: Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/29 [spctools-discuss] Mascot2XML issues alastair.skeffington via spctools-discuss
2018/08/29 [spctools-discuss] Re: Tools for search results comparisons alastair.skeffington via spctools-discuss
2018/08/23 [spctools-discuss] TPP course Orlando Sep 25-29 Eric Deutsch
2018/08/21 [spctools-discuss] Re: Multi-threaded Protein Prophet Adam Rabalski
2018/08/20 [spctools-discuss] Re: Convert mgf to mzML/mzXML Adam Rabalski
2018/08/20 [spctools-discuss] Re: Multi-threaded Protein Prophet Adam Rabalski
2018/08/16 [spctools-discuss] Multi-threaded Protein Prophet Alan Smith
2018/08/10 [spctools-discuss] Re: Great peptide-level quant but no protein-level quant for some proteins. [email protected]
2018/08/09 Re: [spctools-discuss] TPP on linux command line Chris Waizenegger
2018/08/08 Re: [spctools-discuss] Analyze peptides- error Darya Laptanovich
2018/08/08 Re: [spctools-discuss] TPP on linux command line Luis Mendoza
2018/08/08 Re: [spctools-discuss] TPP on linux command line Chris Waizenegger
2018/08/06 [spctools-discuss] Change default options in peptide prophet/iprophet/protein prophet Joey Davis
2018/07/30 [spctools-discuss] Re: Convert mgf to mzML/mzXML Adam Rabalski
2018/07/30 [spctools-discuss] Re: Convert mgf to mzML/mzXML Michael Hoopmann
2018/07/30 [spctools-discuss] Re: Convert mgf to mzML/mzXML Adam Rabalski
2018/07/25 [spctools-discuss] Re: How to import TSV/txt from PeakView into SpectraST Henry Lam
2018/07/25 [spctools-discuss] Re: SpectraST deleting unmapped not working as expected -cD RefreshDatabase, -cu refreshDeleteUnmapped and -cd refreshDeleteMultimapped Henry Lam
2018/07/24 [spctools-discuss] Re: SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra? Henry Lam
2018/07/24 [spctools-discuss] Re: SpectraST: Can't process NIST .msp file Henry Lam
2018/07/20 [spctools-discuss] Re: SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra? Chih-Chiang Tsou
2018/07/20 [spctools-discuss] Re: SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra? Henry Lam
2018/07/20 [spctools-discuss] Libra normalization problem Rachel Nadeau
2018/07/20 [spctools-discuss] Re: SpectraST: Can't process NIST .msp file wout
2018/07/20 [spctools-discuss] Tools for search results comparisons alastair.skeffington via spctools-discuss
2018/07/19 [spctools-discuss] SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra? Chih-Chiang Tsou
2018/07/15 [spctools-discuss] Re: SpectraST: Can't process NIST .msp file Henry Lam
2018/07/15 [spctools-discuss] How to import TSV/txt from PeakView into SpectraST ML
2018/07/13 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
2018/07/12 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
2018/07/12 [spctools-discuss] Spectrast unable to differentiate Trimethyl and Acetyl Vidya Venkatraman
2018/07/12 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities David Shteynberg
2018/07/10 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
2018/07/10 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
2018/07/10 [spctools-discuss] SpectraST deleting unmapped not working as expected -cD RefreshDatabase, -cu refreshDeleteUnmapped and -cd refreshDeleteMultimapped ML
2018/07/10 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
2018/07/09 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities Piero Giansanti
2018/07/08 [spctools-discuss] PepXML Viewer Max
2018/07/05 Re: [spctools-discuss] PTMProphetParser error help! Emma Whittington
2018/07/04 Re: [spctools-discuss] TPP on linux command line alastair.skeffington via spctools-discuss
2018/06/29 [spctools-discuss] Re: How to export unassigned mass spectra from Proteome Discoverer 2.0 ahegde
2018/06/28 [spctools-discuss] mascot2xml doesn't recognise semi-lysArginase searches Peter Bell
2018/06/26 Re: [spctools-discuss] Question about Error Table (iProphet) David Shteynberg
2018/06/26 [spctools-discuss] Error table question Rachel Nadeau
2018/06/26 [spctools-discuss] Question about Error Table (iProphet) Rachel Nadeau
2018/06/25 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
2018/06/25 Re: [spctools-discuss] TPP on linux command line David Shteynberg
2018/06/25 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
2018/06/25 Re: [spctools-discuss] PTMProphetParser error help! David Shteynberg
2018/06/25 [spctools-discuss] TPP on linux command line alastair.skeffington via spctools-discuss
2018/06/23 Re: [spctools-discuss] PTMProphetParser error help! Emma Whittington
2018/06/23 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Vidya Venkatraman
2018/06/22 Re: [spctools-discuss] PTMProphetParser error help! David Shteynberg
2018/06/22 [spctools-discuss] PTMProphetParser error help! Emma Whittington
2018/06/21 Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? pbell . science
2018/06/21 Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? David Shteynberg
2018/06/21 Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? pbell . science
2018/06/21 Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? David Shteynberg
2018/06/21 Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? pbell . science
2018/06/20 Re: [spctools-discuss] QualScore cannot be found anywhere:( Luis Mendoza
2018/06/20 Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? David Shteynberg
2018/06/19 [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards? pbell . science
2018/06/19 [spctools-discuss] QualScore cannot be found anywhere:( flora . yufang . liu
2018/06/18 Re: [spctools-discuss] MS3 quantification chanyeric
2018/06/18 Re: [spctools-discuss] MS3 quantification Jimmy Eng
2018/06/18 Re: [spctools-discuss] MS3 quantification chanyeric
2018/06/16 [spctools-discuss] How to export unassigned mass spectra from Proteome Discoverer 2.0 Jiancheng Ding
2018/06/12 Re: [spctools-discuss] Re: No prot-MODELS pbell . science
2018/06/12 Re: [spctools-discuss] Re: No prot-MODELS pbell . science
2018/06/12 Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets pbell . science
2018/06/12 Re: [spctools-discuss] iProphet for Leucine/isoleucine IDs David Shteynberg
2018/06/12 Re: [spctools-discuss] iProphet for Leucine/isoleucine IDs Chih-Chiang Tsou
2018/06/12 Re: [spctools-discuss] iProphet for Leucine/isoleucine IDs David Shteynberg
2018/06/12 [spctools-discuss] iProphet for Leucine/isoleucine IDs Chih-Chiang Tsou
2018/06/11 Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets pbell . science
2018/06/11 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
2018/06/11 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
2018/06/11 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Peter Sudmant
2018/06/11 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities David Shteynberg
2018/06/11 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
2018/06/11 Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Peter Sudmant
2018/06/11 Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities Piero Giansanti
2018/06/07 [spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Antonio Ortega
2018/06/06 Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets pbell . science
2018/06/06 RE: [spctools-discuss] Re: Stpeter comet vs Xtandem? Eric Deutsch
2018/06/06 RE: [spctools-discuss] Re: Stpeter comet vs Xtandem? Eric Deutsch
2018/06/06 Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets David Shteynberg
2018/06/05 Re: [spctools-discuss] Peptide prophet - use of decoy database for X! searches? David Shteynberg
2018/06/05 Re: [spctools-discuss] Peptide prophet - use of decoy database for X! searches? pbell . science
2018/06/05 Re: [spctools-discuss] Peptide prophet - use of decoy database for X! searches? David Shteynberg
2018/06/05 [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets pbell . science
2018/06/05 [spctools-discuss] Peptide prophet - use of decoy database for X! searches? Peter Bell
2018/06/05 [spctools-discuss] Peptide prophet - use of decoy database for X! searches? pbell . science
2018/06/05 [spctools-discuss] Re: Stpeter comet vs Xtandem? Panos Ioannidis
2018/06/05 [spctools-discuss] Re: Stpeter comet vs Xtandem? Jason Winget
2018/06/05 [spctools-discuss] Re: Stpeter comet vs Xtandem? Panos Ioannidis
2018/06/04 [spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Michael Hoopmann
2018/06/04 [spctools-discuss] Re: Convert mgf to mzML/mzXML Panos Ioannidis
2018/06/03 [spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Antonio Ortega
2018/06/03 [spctools-discuss] Re: Convert mgf to mzML/mzXML Antonio Ortega
2018/06/02 [spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI Michael Hoopmann
2018/06/02 [spctools-discuss] Re: TPP 5.1.0 installation fails Michael Hoopmann
2018/06/02 [spctools-discuss] Re: TPP 5.1.0 installation fails Panos Ioannidis
2018/06/02 [spctools-discuss] Re: Convert mgf to mzML/mzXML Panos Ioannidis