Daniel, You are missing a Perl module. You need to install it with:
apt-get install libxml-parser-perl DT -- David Trudgian Ph.D. Instructor, Biochemistry Dept and Proteomics Core UT Southwestern Medical Center at Dallas 6001 Forest Park Rd, Dallas, TX 75390-8816 Room:ND6.214 Tel:(214)648-7025 Fax:(214)645-6298 From: [email protected] [mailto:[email protected]] On Behalf Of Daniel FS Sent: Friday, July 20, 2012 12:50 PM To: [email protected] Subject: [spctools-discuss] Problems with TPP 4.5.2 installation on Ubuntu 12.04 Hi, I was following the tutorial to install TPP 4.5.2 on Ubuntu 10.04 described here http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3 and when I tried to install the boost-build package, Ubuntu returns a message saying that boost-build was an older version and Ubuntu already have a replacing package. Until this time everything was fine, but when I tried to build TPP using "make && make install" command, Ubuntu returns me the following message error: " root@PowerEdge:/usr/local/src/TPP-4.5.2/src#<mailto:root@PowerEdge:/usr/local/src/TPP-4.5.2/src#> make && make install mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686 make -C ../extern/xtandem/src TANDEM_PARAMETERS_INSTALL_DIR="/usr/local/tpp/bin/" SRC_ROOT="/usr/local/src/TPP-4.5.2/src/" ARCH=Ubuntu-i686 BUILD_DIR=/usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686 EXPAT_LIB=/usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/libexpat.a ZLIB_INCL="" ZLIB_LIB="-lz " USER_OBJS="/usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/TPPVersionInfo.o" make[1]: Entering the directory `/usr/local/src/TPP-4.5.2/extern/xtandem/src' make[1]: Out of the directory `/usr/local/src/TPP-4.5.2/extern/xtandem/src' mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/help mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/schema mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/images cd perl_paths; export PERL=perl; make -f perl_paths.makefile all make[1]: Entering the directory `/usr/local/src/TPP-4.5.2/src/perl_paths' perl -pe "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath \-wp //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g " < ../../CGI/show_nspbin.pl > ../../build/Ubuntu-i686/show_nspbin.pl perl -c -I ../../build/Ubuntu-i686 ../../build/Ubuntu-i686/show_nspbin.pl Can't locate XML/Parser.pm in @INC (@INC contains: ../../build/Ubuntu-i686 /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ../../build/Ubuntu-i686/show_nspbin.pl line 33. BEGIN failed--compilation aborted at ../../build/Ubuntu-i686/show_nspbin.pl line 33. make[1]: ** [../../build/Ubuntu-i686/show_nspbin.pl] Error 2 make[1]: ** Deleting file `../../build/Ubuntu-i686/show_nspbin.pl' make[1]: Out of the directory `/usr/local/src/TPP-4.5.2/src/perl_paths' make: ** [perl_paths] Error 2 " Apparently the program couldn't find the XML/Parser.pm in somewhere away from my pc ("Can't locate XML/Parser.pm in @INC"). So I wish to know if someone else had this problem, if have some kind of relation with boost-build package and (of course) if someone could resolve that. Thanks in advance and sorry for some eventual misspelling, Daniel. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/yLaHR8SuF3MJ. To post to this group, send email to [email protected]<mailto:[email protected]>. To unsubscribe from this group, send email to [email protected]<mailto:[email protected]>. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. ________________________________ UT Southwestern Medical Center The future of medicine, today. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
