Thanks for your fast and detailed reply, Jimmy! A combination of your suggestions solved the problem. First I moved the file A1A2merged.mzXML into the correct directory specified in the pepXML file. Second, I needed to change the following line in the .pepXML file from:
<msms_run_summary base_name="c:\MSGFDB\output\orbivelos\A1A2mergedmzxml" ... to: <msms_run_summary base_name="c:\MSGFDB\output\orbivelos\A1A2merged" Thanks again and best regards, Jesse -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/XKO1bak9YRYJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
