Just a note for anybody coming across this in Google Groups that a fix for the problem I observed is at:
https://groups.google.com/forum/#!topic/spctools-discuss/k0cuu3QU4uY DT On Tuesday, July 17, 2012 6:04:06 PM UTC-5, Dave Trudgian wrote: > > Hi All, > > I'm observing a strange crash in Tandem2XML in 4.5.2 that's dependent on > the input filename of the tandem xml file. > > We have OFFGEL fractions searched with X!Tandem, and output named e.g.: > > EColi_07_10_12_1microlitre_01.tandem.xml > > If I try to convert with Tandem2XML it will crash with a glibc free(): > invalid next size (fast) error. However, if I rename to any of the > following it will work: > > EColi_07_10_12_1microlitre_1.tandem.xml > EColi_07_10_12_1microlitre_001.tandem.xml > 01.tandem.xml > > It doesn't matter if the number at the end is 01 or 02 or 12 etc, it will > always crash if there are 2 digits at the end before the .tandem.xml, not > if there's just 1, or just 3. Also if i gzip the file it will always work. > > This seems to be a weird filename parsing bug somewhere, maybe in the RAMP > / adapter stuff? Just wondering if anyone has any ideas of where to look > before I compile a debug TPP and try and trace it? > > Thanks, > > DT > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/b5rXbvDynD8J. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
