spctools-discuss

Messages by Date

2019/11/05 RE: [spctools-discuss] Re: Question: mzML parsing issue SpectraST 5.0 (stand alone, Linux, MacOS) 'Eric Deutsch' via spctools-discuss
2019/11/05 [spctools-discuss] Re: Question: mzML parsing issue SpectraST 5.0 (stand alone, Linux, MacOS) oliveralka
2019/10/30 [spctools-discuss] Question: mzML parsing issue SpectraST 5.0 (stand alone, Linux, MacOS) Oliver Alka
2019/10/28 [spctools-discuss] New to TPP: trouble understanding search parameters Tanner Tessier
2019/10/15 [spctools-discuss] Re: Best itraq quantification method using Fusion Phillip Wilmarth
2019/10/04 [spctools-discuss] Peptideprophet/iprophet/proteinprophet to combine MaxQuant output? Jesse
2019/09/30 Re: [spctools-discuss] TPP installation failure in RHEL 7.4 'David Shteynberg' via spctools-discuss
2019/09/30 Re: [spctools-discuss] TPP installation failure in RHEL 7.4 Jai Ganesh
2019/09/30 Re: [spctools-discuss] TPP installation failure in RHEL 7.4 'David Shteynberg' via spctools-discuss
2019/09/30 [spctools-discuss] TPP installation failure in RHEL 7.4 arun kumar
2019/09/26 Re: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Kristina Plate
2019/09/24 RE: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Eric Deutsch
2019/09/24 Re: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Kristina Plate
2019/09/23 Re: [spctools-discuss] Questions about spectral library generation different search engines and shared peptides Nikita Boeren
2019/09/23 RE: [spctools-discuss] Questions about spectral library generation different search engines and shared peptides Eric Deutsch
2019/09/23 RE: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Eric Deutsch
2019/09/23 Re: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Kristina Plate
2019/09/20 RE: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Eric Deutsch
2019/09/20 [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST Kristina Plate
2019/09/20 Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff Thomas Gossenreiter
2019/09/20 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 Thomas Gossenreiter
2019/09/19 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 'David Shteynberg' via spctools-discuss
2019/09/19 Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff 'David Shteynberg' via spctools-discuss
2019/09/19 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 'Michael Hoopmann' via spctools-discuss
2019/09/19 [spctools-discuss] Kojak + PeptideProphet FDR cutoff Thomas Gossenreiter
2019/09/16 [spctools-discuss] Best itraq quantification method using Fusion Lifu Sheng
2019/09/16 [spctools-discuss] Re: What happens during consensus building? Kristina Plate
2019/09/15 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 Thomas Gossenreiter
2019/09/13 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 'David Shteynberg' via spctools-discuss
2019/09/13 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 Thomas Gossenreiter
2019/09/12 Re: [spctools-discuss] Double or sequential digest using Kojak in combination with PeptideProphet nzsuzsanna
2019/09/12 Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1 David Shteynberg
2019/09/10 Re: [spctools-discuss] Double or sequential digest using Kojak in combination with PeptideProphet Michael Hoopmann
2019/09/10 [spctools-discuss] Double or sequential digest using Kojak in combination with PeptideProphet nzsuzsanna
2019/09/03 [spctools-discuss] What happens during consensus building? Kristina Plate
2019/08/22 [spctools-discuss] How to quantify proteins using St Peter? Jason Winget
2019/08/21 [spctools-discuss] How to quantify proteins using St Peter? Debangana Chakravorty
2019/08/20 Re: [spctools-discuss] Comet2018+PTMProphet Janel Beckley
2019/08/13 Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611 smdb
2019/08/13 Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611 smdb
2019/08/13 Re: [spctools-discuss] Comet2018+PTMProphet David Shteynberg
2019/08/13 Re: [spctools-discuss] xinteract exited with non-zero exit code: 139 [stuck on PeptideProphetParser command] David Shteynberg
2019/08/13 [spctools-discuss] Re: problem installing TPP 5.2 on CentOS Linux release 7.3.1611 smdb
2019/08/13 Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611 David Shteynberg
2019/08/13 [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611 smdb
2019/08/12 [spctools-discuss] Re: problem to install TPP 5.2.0 'Lars Brinkmann' via spctools-discuss
2019/08/12 [spctools-discuss] xinteract exited with non-zero exit code: 139 [stuck on PeptideProphetParser command] sangramjit basu
2019/08/10 Re: [spctools-discuss] Comet2018+PTMProphet Janel Beckley
2019/08/09 Re: [spctools-discuss] Comet2018+PTMProphet David Shteynberg
2019/08/09 [spctools-discuss] Comet2018+PTMProphet Janel
2019/08/08 [spctools-discuss] Re: Error spectrast create mode smdb
2019/08/08 [spctools-discuss] Re: Error spectrast create mode smdb
2019/08/08 [spctools-discuss] Re: Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6) sangramjit basu
2019/08/07 [spctools-discuss] Re: Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6) Jimmy Eng
2019/08/07 [spctools-discuss] Problems installing TPP 5.2.0 sangramjit basu
2019/08/07 [spctools-discuss] iRT calculation in existing library via import Kristina Plate
2019/08/07 [spctools-discuss] Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6) sangramjit basu
2019/07/31 Re: [spctools-discuss] X!Tandem search fails in TPP 5.0.0 sudip ghosh
2019/07/31 [spctools-discuss] X!Tandem search failed in TPP v5.0.0 sudip ghosh
2019/07/30 Re: [spctools-discuss] X!Tandem search fails in TPP 5.0.0 David Shteynberg
2019/07/30 [spctools-discuss] X!Tandem search fails in TPP 5.0.0 sudip ghosh
2019/07/29 Re: [spctools-discuss] TPP SpectraST Failed to open input file David Shteynberg
2019/06/25 RE: [spctools-discuss] problem to install TPP 5.2.0 Eric Deutsch
2019/06/25 [spctools-discuss] problem to install TPP 5.2.0 Virginie Imbault
2019/06/13 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/13 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 Alejandro
2019/06/11 [spctools-discuss] Upcoming Trans-Proteomic Pipeline (TPP) courses Eric Deutsch
2019/06/11 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/11 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 Alejandro
2019/06/11 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/10 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 Alejandro
2019/06/10 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/10 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 Alejandro
2019/06/10 [spctools-discuss] Whether PeptideProphet tool can be used to validate the PSM identified with different algorithm other than SEQUEST, TANDEM, COMET etc.. Sangeetha R
2019/06/07 Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides Vidya Venkatraman
2019/06/07 Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides Jimmy Eng
2019/06/07 Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides Vidya Venkatraman
2019/06/05 Re: [spctools-discuss] RefreshParser within xinteract unable to find all proteins corresponding to identified peptides Jimmy Eng
2019/06/03 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/03 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/03 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/03 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/03 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 Alejandro
2019/06/02 Re: [spctools-discuss] Re: Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia Ankit Balhara
2019/06/01 Re: [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 David Shteynberg
2019/06/01 [spctools-discuss] Re: Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia Alejandro
2019/06/01 [spctools-discuss] iProphet failing when combining Comet and MSGF in TPP 5.2 using Ubuntu 18.04 Alejandro
2019/05/30 [spctools-discuss] TPP @ ASMS 2019 -- booth #118 + Tuesday Workshop Luis Mendoza
2019/05/25 [spctools-discuss] Libra qunatification error in window version 10 Syed Azmal Ali
2019/05/20 Re: [spctools-discuss] Re: update iRT in an existing .splib library Matthew Russell
2019/05/20 Re: [spctools-discuss] Re: update iRT in an existing .splib library Matthew Russell
2019/05/19 Re: [spctools-discuss] Re: update iRT in an existing .splib library Henry Lam
2019/05/18 Re: [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04 Alejandro
2019/05/17 Re: [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04 Alejandro
2019/05/17 RE: [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04 Eric Deutsch
2019/05/17 [spctools-discuss] TPP 5.2 compile error Ubuntu 18.04 Alejandro
2019/05/17 Re: [spctools-discuss] Re: update iRT in an existing .splib library Matthew Russell
2019/05/16 [spctools-discuss] Re: update iRT in an existing .splib library Henry Lam
2019/05/16 [spctools-discuss] update iRT in an existing .splib library Matthew Russell
2019/05/13 [spctools-discuss] Error spectrast create mode Lei Wang
2019/05/12 [spctools-discuss] Comet search for two constant modification on one amino acid Kamal Mandal
2019/05/02 [spctools-discuss] Re: Xtandem searches crash and unable to kill command Valdemir Melechco Carvalho
2019/05/02 [spctools-discuss] Xtandem searches crash and unable to kill command Valdemir Melechco Carvalho
2019/04/09 Re: [spctools-discuss] PTMProphet 5.2.0. error Felipe da Veiga Leprevost
2019/04/09 Re: [spctools-discuss] PTMProphet 5.2.0. error David Shteynberg
2019/04/09 Re: [spctools-discuss] PTMProphet 5.2.0. error Felipe da Veiga Leprevost
2019/04/09 Re: [spctools-discuss] TPP 5.2 Compile Error Dean
2019/04/09 Re: [spctools-discuss] TPP 5.2 Compile Error David Shteynberg
2019/04/09 [spctools-discuss] TPP 5.2 Compile Error Dean
2019/04/08 [spctools-discuss] Processing an Output from StPeter in MSstats Dmytro Morderer
2019/04/07 Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet Alexey Nesvizhskii
2019/04/06 RE: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet Eric Deutsch
2019/04/05 Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet ilya gertsman
2019/04/05 Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet Ankit Balhara
2019/04/05 RE: [EXT] Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet Noel Carter
2019/04/05 Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet David Shteynberg
2019/04/04 Re: [spctools-discuss] Re: Combining the DIA Umpire results by iProphet Ankit Balhara
2019/04/04 [spctools-discuss] Re: Combining the DIA Umpire results by iProphet Felipe da Veiga Leprevost
2019/04/03 [spctools-discuss] Combining the DIA Umpire results by iProphet Ankit Balhara
2019/04/02 Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Jason
2019/04/02 Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Luis Mendoza
2019/03/30 Re: [spctools-discuss] PTMProphet 5.2.0. error Felipe da Veiga Leprevost
2019/03/29 Re: [spctools-discuss] PTMProphet 5.2.0. error David Shteynberg
2019/03/26 [spctools-discuss] xinteract TPP v5.2.0 - exited with non-zero exit code: 139 Elva Liu
2019/03/25 Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Luis Mendoza
2019/03/25 Re: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Jason
2019/03/25 RE: [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Eric Deutsch
2019/03/25 [spctools-discuss] Re: StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Jason Winget
2019/03/25 [spctools-discuss] StPeter SIn displays all --n/a-- in protXML viewer (TPP v. 5.2.0) Jason Winget
2019/03/22 Re: [spctools-discuss] PeptideProphet scores David Shteynberg
2019/03/22 [spctools-discuss] PeptideProphet scores Felipe da Veiga Leprevost
2019/03/19 Re: [spctools-discuss] PTMProphet 5.2.0. error Felipe da Veiga Leprevost
2019/03/19 Re: [spctools-discuss] PTMProphet 5.2.0. error David Shteynberg
2019/03/19 [spctools-discuss] PTMProphet 5.2.0. error Felipe da Veiga Leprevost
2019/03/15 Re: [spctools-discuss] Combining the data on two tissues in one library Ankit Balhara
2019/03/15 RE: [spctools-discuss] Combining the data on two tissues in one library Eric Deutsch
2019/03/14 [spctools-discuss] Combining the data on two tissues in one library Ankit Balhara
2019/03/13 Re: [spctools-discuss] StPeter ERROR: Unknown modification: C[158] Luis Mendoza
2019/03/13 [spctools-discuss] TPP 5.2.0 Release is now available Luis Mendoza
2019/03/12 [spctools-discuss] Re: TPP Comet Peptide Prophet Error [email protected]
2019/03/08 [spctools-discuss] TPP 5.1.0 installation and Perl Amit Yadav
2019/02/28 Re: [spctools-discuss] Warning message during the peptideprophet analysis Ankit Balhara
2019/02/21 Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does David Shteynberg
2019/02/21 Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does Michael Riffle
2019/02/21 Re: [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does David Shteynberg
2019/02/21 [spctools-discuss] peptideprophet does not produce valid pepXML, but iprophet does Michael Riffle
2019/02/21 Re: [spctools-discuss] StPeter ERROR: Unknown modification: C[158] Goutham Vasam
2019/02/21 RE: [spctools-discuss] StPeter ERROR: Unknown modification: C[158] Michael Hoopmann
2019/02/15 Re: [spctools-discuss] Warning message during the peptideprophet analysis Jesse Meyer
2019/02/14 Re: [spctools-discuss] Warning message during the peptideprophet analysis Ankit Balhara
2019/02/14 Re: [spctools-discuss] Warning message during the peptideprophet analysis Jesse Meyer
2019/02/14 [spctools-discuss] Warning message during the peptideprophet analysis Ankit Balhara
2019/02/05 RE: [spctools-discuss] mzXML - peak encoding/decoding Eric Deutsch
2019/02/04 [spctools-discuss] mzXML - peak encoding/decoding jeffreyavansanten
2019/01/30 Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries? Hampton, Brian
2019/01/29 [spctools-discuss] Re: Problem during spectrast library generation Ankit Balhara
2019/01/29 Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries? David Shteynberg
2019/01/29 Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries? Hampton, Brian
2019/01/29 Re: [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries? David Shteynberg
2019/01/29 RE: [spctools-discuss] Problem during spectrast library generation Eric Deutsch
2019/01/29 Re: [spctools-discuss] Problem during spectrast library generation Ankit Balhara
2019/01/29 RE: [spctools-discuss] Problem during spectrast library generation Eric Deutsch
2019/01/29 [spctools-discuss] Quantic vs St. Peter Hampton, Brian
2019/01/29 [spctools-discuss] RefreshParser reports number of unmapped entries - why are there unmapped entries? Hampton, Brian
2019/01/29 [spctools-discuss] Problem during spectrast library generation Ankit Balhara
2019/01/28 [spctools-discuss] A question about the Mayu Ankit Balhara
2019/01/15 [spctools-discuss] Problem analyzing MS-GF+ data using peptideprophet tool of TPP GUI- Petunia Ankit Balhara
2019/01/15 [spctools-discuss] Anlaysis of MS-GF+ data using Peptideprophet tool of TPP GUI "Petunia" Ankit Balhara
2019/01/10 [spctools-discuss] Re: xsl file not being created Jimmy Eng
2019/01/07 [spctools-discuss] xsl file not being created Bronson Petterson
2019/01/02 [spctools-discuss] Re: A question about ProteinProphet Le ZHENG
2019/01/02 Re: [spctools-discuss] some questions: model failure, parametric vs semi-parametric, same search engine but different parameters, function of scripts David Shteynberg
2018/12/28 Re: [spctools-discuss] Libra quantification for TMT 11-plex Luis Mendoza
2018/12/20 [spctools-discuss] Libra quantification for TMT 11-plex Rachel Nadeau
2018/12/11 [spctools-discuss] some questions: model failure, parametric vs semi-parametric, same search engine but different parameters, function of scripts alastair.skeffington via spctools-discuss
2018/12/10 Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Robert
2018/12/09 RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Eric Deutsch
2018/12/06 Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Robert Winkler
2018/12/03 RE: [spctools-discuss] Re: External Tools Export mzIdentML Eric Deutsch
2018/12/03 [spctools-discuss] Re: External Tools Export mzIdentML [email protected]
2018/12/03 RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Eric Deutsch
2018/12/03 Re: [spctools-discuss] Mascot2XML: decoys alastair.skeffington via spctools-discuss
2018/12/01 Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Robert
2018/11/29 Re: [spctools-discuss] Failed in running ASAPRatio David Shteynberg
2018/11/29 Re: [spctools-discuss] Failed in running ASAPRatio David Shteynberg
2018/11/29 Re: [spctools-discuss] Failed in running ASAPRatio Ruifeng Hu
2018/11/29 [spctools-discuss] Failed in running ASAPRatio Ruifeng Hu
2018/11/28 RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Eric Deutsch
2018/11/28 RE: [spctools-discuss] root in TPP docker image 16899d782bad on Win 10? Eric Deutsch
2018/11/27 [spctools-discuss] root in TPP docker image 16899d782bad on Win 10? Robert
2018/11/27 Re: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Robert
2018/11/26 RE: [spctools-discuss] simple text editor for TPP 5.2 docker? Eric Deutsch
2018/11/23 Re: [spctools-discuss] Mascot2XML: decoys David Shteynberg
2018/11/23 [spctools-discuss] simple text editor for TPP 5.2 docker? Robert
2018/11/23 Re: [spctools-discuss] Mascot2XML: decoys alastair.skeffington via spctools-discuss
2018/11/22 RE: [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Eric Deutsch
2018/11/22 [spctools-discuss] Re: Running TPP/Petunia GUI with Docker Robert
2018/11/22 Re: [spctools-discuss] TPP 5.2 ProteinProphet WARNING: Trying to compute mass of non-residue: Robert
2018/11/21 [spctools-discuss] working with replicate data and 15N labelled proteins Gunjan Pandey
2018/11/21 Re: [spctools-discuss] How to set number of cores/threads/RAM in TPP Gunjan Pandey