Dear TPP team, I have a question about using the msconvert in TPP package. When I try to convert a wiff file (test-6.wiff, 166MB) to mzML, I got 5 mzML files with suffix that I really don't know what it is about.
The first 3 files (test-6-2.mzML, test-6-11.mzML, test-6-12.mzML) are only about 3 kB, and the last two (test-6-13.mzML, test-6-14.mzML) are about 500-600 MB. here is the log info: ________________________________________________________ c:\Inetpub\tpp-bin\msconvert c:/Inetpub/wwwroot/ISB/data/data/2/test-6.wiff -v --mzML -o c:/Inetpub/wwwroot/ISB/data/data/2 --filter "peakPicking true [1,2]" format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ], ByteOrder_LittleEndian, Compression_None) indexed="true" outputPath: c:/Inetpub/wwwroot/ISB/data/data/2 extension: .mzML contactFilename: filters: peakPicking true [1,2] filenames: c:/Inetpub/wwwroot/ISB/data/data/2/test-6.wiff processing file: c:/Inetpub/wwwroot/ISB/data/data/2/test-6.wiff [Reader_ABI::read] Error opening run 6 in test-6.wiff: [WiffFileImpl::getPeriodCount] External component has thrown an exception. writing output file: c:/Inetpub/wwwroot/ISB/data/data/2/test-6-2.mzML Error writing run 1 in test-6.wiff: [ExperimentImpl::getBPC] Index was outside the bounds of the array. writing output file: c:/Inetpub/wwwroot/ISB/data/data/2/test-6-11.mzML Error writing run 2 in test-6.wiff: [ExperimentImpl::getBPC] Index was outside the bounds of the array. writing output file: c:/Inetpub/wwwroot/ISB/data/data/2/test-6-12.mzML Error writing run 3 in test-6.wiff: [ExperimentImpl::getBPC] Index was outside the bounds of the array. writing output file: c:/Inetpub/wwwroot/ISB/data/data/2/test-6-13.mzML 6298/6298 1/1 writing output file: c:/Inetpub/wwwroot/ISB/data/data/2/test-6-14.mzML 6839/6839 1/1 Command Successful ________________________________________________________ I use the the TPP_Setup_v4_5_RAPTURE_rev_2, with AB's Analyst QS 1.1 library. Can anyone explain why I got 5 instead of 1 single mzML file? Plus, I'm wondering if it is normal that mzML files are 10X times bigger than wiff. files? thank you so much! sunsun -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
