Hi, for mass spec analysis of an unsequenced organism we are using X!tandem to search against the FASTA database of a related organism allowing for point mutations in refinement mode. After transformation of the tandem.xml search results to pep.xml, peptides containing point mutations are still present but are shown with the wrong sequence information (the one from the FASTA file, point mutation not considered) and masses. Is there any way that peptides containing point mutation are shown also in the pep.xml file with an annotation marking them as mutated or preferentially with the correct sequence information.
Thanks. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/jWPYogAxfmMJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
