Hi all, How did this problem got solved eventually ? I have acquired Q-Exactive data with lockmass on (for metabolomics uses) and the lockmass functions seems the only one to be recognized by xcms, I appreciate your help, Cheers, Anas
On Friday, June 25, 2010 11:36:27 PM UTC+2, Matt Chambers wrote: > > Hi Andris and Charlie, > > Overdue support for filter lines found in Exactive files has finally been > added to ProteoWizard (as of r2087). Also there was a problem with parsing > the > instrument model and that should also be fixed. > > Thanks for your reports and for uploading the files. > -Matt > > On 6/24/2010 3:46 PM, Zhenyu Chang wrote: > However, I have encountered the following problem when using msconvert > tool. I was trying to convert a .RAW data generated by Thermo Fisher > Exactive instrument > to mzML 1.1 data format. > > > On 11/17/2009 3:19 AM, Andris Jankevics wrote: > > Hi Matt. > > > > Thank you for your work, these data will be mostly metabolomics data > > sets which will be analyzed by XCMS and several other software tools. > > It would be nice to have functionality in ReAdW to extract only mzXML > > file by based on scan event (for example only lock mass corrected > > positive slice), but this is not so essential. > > > > best regards, > > Andris > > > > On Mon, Nov 16, 2009 at 8:36 PM, Matthew Chambers > > <[email protected] <javascript:>> wrote: > >> That file requires Xcalibur 2.1, which doesn't run on Windows 7 x64...I > >> had to use a Windows VM to view it. It indeed appears they've put scan > >> segment and scan event in the filter line, and have added a new keyword > >> ("lock"). The lock keyword appears to only be applied if at least one of > >> the configured lock masses was found in the spectrum, in which case some > >> adjustment has been applied; otherwise, it won't have the lock keyword > >> and no adjustment is applied. It shouldn't be difficult to add support > >> for these changes, although I'm curious what you're planning to do with > >> this data once it's in mzXML format. > >> > >> -Matt > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/10Iav1wCnSoJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
