I have, apparently successfully compiled TPP 4.6.1 on Ubuntu server v12.04.
 The hardware is a dual quad core MacPro.

However, I get the following error:

Formatting htmldoc.pdf...
> *** buffer overflow detected ***: ../htmldoc/htmldoc terminated
> ======= Backtrace: =========
> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x37)[0x2b3605ba1807]
> /lib/x86_64-linux-gnu/libc.so.6(+0x109700)[0x2b3605ba0700]
> ../htmldoc/htmldoc[0x41a4a5]
> ../htmldoc/htmldoc[0x42ab34]
> ../htmldoc/htmldoc[0x4050f8]
> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed)[0x2b3605ab876d]
> ../htmldoc/htmldoc[0x4052fd]
> ======= Memory map: ========
> 00400000-00443000 r-xp 00000000 08:02 52038108
> /usr/local/src/TPP-4.6.1/trans_proteomic_pipeline/extern/htmldoc/htmldoc/htmldoc
> 00642000-00643000 r--p 00042000 08:02 52038108
> /usr/local/src/TPP-4.6.1/trans_proteomic_pipeline/extern/htmldoc/htmldoc/htmldoc
> 00643000-00645000 rw-p 00043000 08:02 52038108
> /usr/local/src/TPP-4.6.1/trans_proteomic_pipeline/extern/htmldoc/htmldoc/htmldoc
> 00645000-00658000 rw-p 00000000 00:00 0
> 01620000-01a77000 rw-p 00000000 00:00 0
>  [heap]



Does anyone know of a fix for this?

My config is based mostly on this excellent Wiki entry:
http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3

Thanks in advance,

Brian Hampton
Protein Analysis Lab
Center for Vascular and Inflammatory Diseases
University of Maryland School of Medicine
800 West Baltimore Street Rm 307
Baltimore  MD  21201
V: 410-706-8207
F: 410-706-8234

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