Hello, Are you running ProteinProphet on its own? Or as a step in xinteract? Cheers, --Luis
On Wed, Feb 6, 2013 at 5:29 AM, Gautam Saxena <[email protected]> wrote: > When ProteinProphet produces the error "Error: multiple databases > referenced by....", it *still* nevertheless exists with a successful return > code of 0. This obviously causes problems for downstream programs that are > therefore unaware that the ProteinProphet progam errored out. > ProteinProphet should instead return with a non-zero exist code. The > excerpt of the log is below: > > >> ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the >> original Perl by A. Keller (TPP v4.6 OCCUPY rev 1, Build 201210081945 >> (linux)) >> (xml input) (normalize NSP for Protein Length) (report Protein Length) >> (report Protein Mol Weights) (using degen pep info) >> *Error: multiple databases referenced >> by*/usr/ia_working_dir/DASH/DASH_Server/Test_Lab/Users/TestLabAdmin_i-a-inc.com/Workflow_Outputs/GATES__MT-XT-OM_Deiso_100ppm/ipep-tXFk-rfeDfpT2-0to1.pep.xml >> Use RefreshParser to update all input files to common database >> --> >> /usr/ia_working_dir/DASH/DASH_Server/IA_Common/programs/linux_programs/tpp/bin/ProteinProphet >> ipep-tXFk-rfeDfpT2-0to1.pep.xml ipep-tXFk-rfeDfpT2-2to3.pep.xml >> prot-tXFk-lFJIBOTL-0to9998.prot.xml MINPROB0 PROTMW NORMPROTLEN IPROPHET >> EXCEL0 GROUPWTS MININDEP0.2* exited succesfully with value 0* > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
