Hey Damian, You can try a sed command to replace the directory containing '-' which makes it break at the mkdir.
Try: sed -i 's/-x86_64/x86_64/g' Makefile* -David On Wed, Mar 13, 2013 at 9:06 AM, GATTACA <[email protected]> wrote: > Hi guys, > > I'm trying to update our version of TPP to the latest-n-greatest stable > release. > I've downloaded TPP-4.6.2.tgz from sourceforge and gone through the usual > make command. > > I get this error when I hit the X!Tandem build step: > > mkdir -p /usr/local/apps/tpp/trans_proteomic_pipeline/src/../build/-x86_64 > make -C ../extern/xtandem/src_tpp > TANDEM_PARAMETERS_INSTALL_DIR="/usr/local/apps/tpp/bin/" > SRC_ROOT="/usr/local/apps/tpp/trans_proteomic_pipeline/src/" ARCH=-x86_64 > BUILD_DIR=/usr/local/apps/tpp/trans_proteomic_pipeline/src/../build/-x86_64 > EXPAT_LIB=/usr/local/apps/tpp/trans_proteomic_pipeline/src/../extern/expat-2.0.1/.libs/libexpat.a > ZLIB_INCL="" ZLIB_LIB="-lz " > HDF5_INCL="/usr/local/apps/tpp/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6/hdf5/include" > HDF5_LIB="/usr/local/apps/tpp/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6/hdf5/lib/libhdf5_cpp.a > /usr/local/apps/tpp/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6/hdf5/lib/libhdf5.a" > MZPARSER_LIB="/usr/local/apps/tpp/trans_proteomic_pipeline/src/../build/-x86_64/libmzparser.a > " > MZPARSER_INCL="/usr/local/apps/tpp/trans_proteomic_pipeline/src/Parsers/mzParser" > USER_OBJS="/usr/local/apps/tpp/trans_proteomic_pipeline/src/../build/-x86_64/TPPVersionInfo.o" > make[1]: Entering directory > `/usr/local/apps/tpp/trans_proteomic_pipeline.v462/extern/xtandem/src_tpp' > mkdir -p -x86_64 > mkdir: invalid option -- 'x' > Try `mkdir --help' for more information. > make[1]: *** No rule to make target `-x86_64/base64.d', needed by > `/usr/local/apps/tpp/trans_proteomic_pipeline/src/../build/-x86_64/tandem'. > Stop. > make[1]: Leaving directory > `/usr/local/apps/tpp/trans_proteomic_pipeline.v462/extern/xtandem/src_tpp' > make: *** [xtandem] Error 2 > > I think there is a typo in the make file at the mkdir -p -x86_64 command? > Any suggestions on what I could do to remedy this would be greatly > appreciated. > > In case it helps, I'm running RHEL 6.3. 64-bit, fully patched, gcc version > 4.4.7 20120313 (Red Hat 4.4.7-3) > > Thanks in advance for any and all help. > > Damian > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
