Hi, I think the number given under number of unique peptides is actually number of unique PSMs used for the identity of that protein. If you want actual number of unique peptides then you will have to pull the data into an SQL based server and then query it to to count distinct peptides for each protein.
cheers. On Thu, Mar 14, 2013 at 10:00 PM, Sandeep <[email protected]> wrote: > Hi, > > I have recently started using peptide/proteinprophet. I noticed that in my > data, there are several protein groups for which the number of unique > peptidees is more than the number of total peptides (mostly the total > number of peptides is 0). Is this data reliable? How to explain this. > Thanks in advance for any answers. > > Sandeep > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- Kshitiz Tyagi -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
