Certainly, though I assume the same file processed with/without 
sortByScanTime would be the best difference to look at. How do I get them 
to you?
They are small enough to just put in an e-mail if needed.

Den tisdagen den 30:e april 2013 kl. 20:37:12 UTC+2 skrev 
[email protected]:
>
> Just an FYI, I took a quick look at the difference between msconvert in 
> TPP 4.5.2 and 4.6.2 and it looks as if the version in 4.5.2 doesn't support 
> the sortByScanTime filter.  I'm going to assume that this is a relatively 
> new filter added by the ProteoWizard folks.
>
> Any chance you can provide the mzML files created using msconvert from 
> 4.5.2 and 4.6.2 so that we can take a look to see what may be wrong?
>
> -Joe
>
>
>
> On Mon, Apr 29, 2013 at 3:46 PM, ChargedPeptide 
> <[email protected]<javascript:>
> > wrote:
>
>> Okay, I realized that MSConvert from TPP 4.5.2 just ignored 
>> my  sortByScanTime filter for msconvert, tried this with 4.6.2 and it 
>> works. So it seems I might have to give up my sorted scans. Sniff. 
>>
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