Thanks to both of you. Unfortunately after changing the parameters as Mike suggested (from k-score to hrk-score) all of X!tandem scores are not shown in pepXML viewer anymore.....in order to see them I had to manually change the resulting pepXML and to switch the search_engine field in line 4 from "X! Tandem (hrk-score)" back to "X! Tandem (k-score)". Cheers, O
On Tuesday, May 14, 2013 2:52:54 AM UTC+10, Michael Hoopmann wrote: > > Hi OK, > In the tandem params, you need to change: > > <note type="input" label="scoring, algorithm">k-score</note> > > to > > <note type="input" label="scoring, algorithm">hrk-score</note> > > Then I would recommend lowering the "spectrum, fragment monoisotopic > mass error" values to something small and appropriate for hi-res data. > > Cheers, > Mike > > On 5/12/2013 11:45 PM, [email protected] <javascript:> wrote: > > Hi All, > > Is the high-resolution X!Tandem k-score the default K-score plugin (on > > TPP 4.6.2) or it require some specific command/setting in X!Tandem > > parameters file? > > Thanks, > > OK > > > > > > -- > > You received this message because you are subscribed to the Google > > Groups "spctools-discuss" group. > > To unsubscribe from this group and stop receiving emails from it, send > > an email to [email protected] <javascript:>. > > To post to this group, send email to > > [email protected]<javascript:>. > > > Visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > For more options, visit https://groups.google.com/groups/opt_out. > > > > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
