I can give you a command line tool to dump this information from a pep.xml
file easily.  Just let me know if you want a windows or linux binary (or
the C source file) and what other information in the pep.xml file you want
exported.


On Wed, Jul 24, 2013 at 5:50 PM, Bosco Ho <[email protected]> wrote:

> Does anyone know if there is a way to get x!tandem to write out the
> matched ions to file from the command line?
>
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