You would need a version of X!Tandem that has k-score in it so use the one distributed with the TPP. Beyond that, the minimum parameter to set would be:
<note type="input" label="scoring, algorithm">k-score</note> On Thu, Jul 25, 2013 at 1:15 PM, Rishika Bisaria <[email protected]>wrote: > Hi, > I am a newbie to proteomics analysis. > I wanted to know how can we use k-score in XTandem. Just modifying the > parameter in the file is sufficient or we have to make other changes also. > Thank You. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
