Dear All: After running proteinProphet, i am wondering if the following message can help me to get protein FDR:
<protein_summary_data_filter min_probability="0.90" sensitivity="0.820" false_positive_error_rate="0.011" predicted_num_correct="885" predicted_num_incorrect="10" /> Can i say that when FDR=0.011, the proteins with probability>0.90 are confident protein id? i.e. the "false_positive_error_rate" here can be regarded as (global)FDR? or do I need to use something, like Mayu, to get the FDR? p.s. BTW, I cannot find Mayu in TPP, can someone show me where it is?(i am using the newest version for windows) Many thanks. -Peter -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
