Hi all,
I am trying to install TPP 4.6.3 on my mac following the instructions
here<http://tools.proteomecenter.org/wiki/index.php?title=The_Trans_Proteomic_Pipeline_(TPP)_for_Mac_OS_X_10.6.4>.
When running the make all command, I get the following error:
perl -pe
"s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath
\-wp
//g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g;s/linux/darwin/g
" < ../../perl/tpp_models.pl > ../../build/darwin/tpp_models.pl
perl -c -I ../../build/darwin ../../build/darwin/tpp_models.pl
syntax error at ../../build/darwin/tpp_models.pl line 630, near "$head
qw(min_prob Sensitivity Error_Rate num_correct num_incorrect)"
Global symbol "$file" requires explicit package name at
../../build/darwin/tpp_models.pl line 643.
syntax error at ../../build/darwin/tpp_models.pl line 652, near "}"
Can't use global @_ in "my" at ../../build/darwin/tpp_models.pl line 655,
near "= @_"
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 657.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 658.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 659.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 660.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 661.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 662.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 663.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 664.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 665.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 666.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 667.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 672.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 682.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 682.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 686.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 686.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 687.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 687.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 688.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 692.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 693.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 695.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 696.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 697.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 701.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 702.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 703.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 705.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 706.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 710.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 711.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 712.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 714.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 716.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 717.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 721.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 722.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 728.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 729.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 731.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 732.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 739.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 740.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 745.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 746.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 747.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 748.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 753.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 754.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 755.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 757.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 758.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 762.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 763.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 764.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 769.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 773.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 774.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 776.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 777.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 780.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 782.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 784.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 785.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 789.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 791.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 791.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 792.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 792.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 796.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 796.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 797.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 799.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 800.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 807.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 808.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 810.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 811.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 815.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 816.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 816.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 818.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 819.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 824.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 825.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 826.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 830.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 831.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 832.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 834.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 834.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 834.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 834.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 836.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 837.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 841.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 842.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 844.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 844.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 846.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 846.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 850.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 851.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 851.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 851.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 851.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 851.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 855.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 855.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 856.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 856.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 859.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 862.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 864.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 864.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 865.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 865.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 866.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 866.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 868.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 868.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 870.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 871.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 874.
Global symbol "%atts" requires explicit package name at
../../build/darwin/tpp_models.pl line 875.
Global symbol "$element" requires explicit package name at
../../build/darwin/tpp_models.pl line 881.
syntax error at ../../build/darwin/tpp_models.pl line 884, near "$head
qw(Error_Rate min_prob num_correct num_incorrect)"
../../build/darwin/tpp_models.pl has too many errors.
make[1]: *** [../../build/darwin/tpp_models.pl] Error 255
make[1]: *** Deleting file `../../build/darwin/tpp_models.pl'
make: *** [perl_paths] Error 2
Could anyone help me with this?
Thanks,
Holy
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/spctools-discuss.
For more options, visit https://groups.google.com/groups/opt_out.
