Dear All:

When i used PTMProphet in Wins,
i got the following error message:

*EXECUTING: run_in c:/Inetpub/wwwroot/ISB/data; 
c:\Inetpub\tpp-bin\PTMProphetParser STY,79.966 MZTOL=0.1 
c:/Inetpub/wwwroot/ISB/data/a549_dda_20121121_01.interact.pep.xml 
interact.ptm.pep.xml *

INFO: Writing file interact.ptm.pep.xml ...
INFO: Reading file 
c:/Inetpub/wwwroot/ISB/data/a549_dda_20121121_01.interact.pep.xml ...
Unknown file type. No file loaded.
ERROR: cannot read scan in data file 
c:/Inetpub/wwwroot/ISB/data/A549_DDA_20121121_01.(null) exiting ...

command "c:\Inetpub\tpp-bin\PTMProphetParser STY,79.966 MZTOL=0.1 
c:/Inetpub/wwwroot/ISB/data/a549_dda_20121121_01.interact.pep.xml 
interact.ptm.pep.xml" failed: Operation not permitted

*Command FAILED*
RETURN CODE:256 

p.s. there is no problem about  *
c:/Inetpub/wwwroot/ISB/data/a549_dda_20121121_01.interact.pep.xml
*
*Could anyone please kindly provide me some solutions to this problem?

BTW, I found so few information about PTMProphet in TPP google group, if 
PTMProphet is not a good strategy to analyze the location of the 
phosphorylation, please let me know.

Many thanks

-Peter


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