Hello! I am running the sequest search. I have read that the search can be really long, but I cannot see any progress in the command line since few hours (attached below), but it is mentioned that: "this command is still running" and there is no error that command failed. Is it as it suppose to be?
thank you RUNSEARCH Written by J.Eng (c) 2000 TPP v4.6 OCCUPY rev 3, Build 201307241109 (MinGW) MzXML2Search -dta -P15 Bladder-cancer-side-wall-BCa09.mzML output mode selected: SEQUEST DTA format MzXML2Search - SEQUEST DTA format Reading Bladder-cancer-side-wall-BCa09.mzML Getting the index offset Reading the index Scan 1 000% 2 000% 3 000% 4 000% ...... Done. mod g+w Bladder-cancer-side-wall-BCa09; cp c:/Inetpub/wwwroot/ISB/data/parameters/sequest.params Bladder-cancer-side-wall-BCa09 cd Bladder-cancer-side-wall-BCa09; find . -maxdepth 1 -depth -name "Bladder-cancer-side-wall-BCa09*.dta" -print | xargs --max-args=50 c:/xcalibur/system/programs/bioworksbrowser/sequest.exe -Pc:/Inetpub/wwwroot/ISB/data/parameters/sequest.params xargs: cannot fork W dniu środa, 8 lipca 2009 19:26:18 UTC+3 użytkownik Ali napisał: > > Hi > > I am running a database search, where I run the .mzXML files against > the database. However, it is complaining of 'cannot fork'. This is > the full message: > > run_in c:/Inetpub/wwwroot/ISB/data/All_7_strains; runsearch -pc:/ > Inetpub/wwwroot/ISB/data/parameters/cbot.params -P15 A1_10.mzXML > > RUNSEARCH > Written by J.Eng (c) 2000 > > mkdir A1_10; chmod g+w A1_10; cp c:\Inetpub\wwwroot\ISB\data\parameters > \cbot.params A1_10/ > msxml2other -dta A1_10.mzXML > Converting A1_10.mzXML to thermofinnigan dta > cd A1_10; dtafilter -A -P15 > cd A1_10; find . -maxdepth 1 -depth -name "A1_10*.dta" -print0 | xargs > -0 -n 500 sequest27.exe -Pc:\Inetpub\wwwroot\ISB\data\parameters > \cbot.params -S > xargs: cannot fork > > command 'C:\Inetpub\ipp-bin\cmd.exe /C C:\Inetpub\ipp-bin\find.exe . - > maxdepth 1 -depth -name "A1_10*.dta" -print0 | xargs -0 -n 500 > sequest27.exe -Pc:\Inetpub\wwwroot\ISB\data\parameters\cbot.params -S' > failed with code 1: Operation not permitted > cd A1_10; out2summary . > ../A1_10.html > > Command Successful > > Any ideas? > > Ali > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
