Hi Joe! Thank you for the prompt reply. Yes, indeed there is a problem with the run. "This command was deemed to have timed-out on the server as per user input. "
I was running two files in the same time, however, before I have started the second one, the status from the first was exactly as I have sent. I have the WIndows 7 and the latest version of TPP: 4.6.3. I have run previousy this data with Proteome Discoverer (sequest) and I have around 52 000 spectra. This was the LC-MS/MS run, 8 hours gradient. Thank you in advance! W dniu środa, 8 lipca 2009 19:26:18 UTC+3 użytkownik Ali napisał: > > Hi > > I am running a database search, where I run the .mzXML files against > the database. However, it is complaining of 'cannot fork'. This is > the full message: > > run_in c:/Inetpub/wwwroot/ISB/data/All_7_strains; runsearch -pc:/ > Inetpub/wwwroot/ISB/data/parameters/cbot.params -P15 A1_10.mzXML > > RUNSEARCH > Written by J.Eng (c) 2000 > > mkdir A1_10; chmod g+w A1_10; cp c:\Inetpub\wwwroot\ISB\data\parameters > \cbot.params A1_10/ > msxml2other -dta A1_10.mzXML > Converting A1_10.mzXML to thermofinnigan dta > cd A1_10; dtafilter -A -P15 > cd A1_10; find . -maxdepth 1 -depth -name "A1_10*.dta" -print0 | xargs > -0 -n 500 sequest27.exe -Pc:\Inetpub\wwwroot\ISB\data\parameters > \cbot.params -S > xargs: cannot fork > > command 'C:\Inetpub\ipp-bin\cmd.exe /C C:\Inetpub\ipp-bin\find.exe . - > maxdepth 1 -depth -name "A1_10*.dta" -print0 | xargs -0 -n 500 > sequest27.exe -Pc:\Inetpub\wwwroot\ISB\data\parameters\cbot.params -S' > failed with code 1: Operation not permitted > cd A1_10; out2summary . > ../A1_10.html > > Command Successful > > Any ideas? > > Ali > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
