Hello Rachel,

Abacus and Qspec can be used for NSAF label-free quantification and are
highly compatible with PeptideProphet,Protein Prophet results.
I am not sure if it is being packaged currently with TPP's current version
but both of the tools can be found here "
http://www.nesvilab.org/software.html";.

best,

puneet



On Tue, Apr 22, 2014 at 9:36 AM, Rachel <[email protected]> wrote:

> Hi David,
>
> Does TPP has its own label-free quantification program? and what is it?
>
> Thanks
> Rachel
>
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-- 
Puneet Kumar Kadimi, M.Sc.-Tech (Bioinformatics)
Research Associate, Center for Agricultural Bioinformatics (CABin),
Indian Agricultural Statistics Research Institute (IASRI),
New Delhi-110012, India

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