Hi Rachel Abacus and Qspec are for spectral count label-free quantification, if you want MS1 intensity-based quantification you might want to look into SuperHirn http://tools.proteomecenter.org/wiki/index.php?title=Software:SuperHirn or OpenMS http://openms.de packages.
Hannes On 22 April 2014 07:06, Punit Kadimi <[email protected]> wrote: > Hello Rachel, > > Abacus and Qspec can be used for NSAF label-free quantification and are > highly compatible with PeptideProphet,Protein Prophet results. > I am not sure if it is being packaged currently with TPP's current version > but both of the tools can be found here > "http://www.nesvilab.org/software.html";. > > best, > > puneet > > > > On Tue, Apr 22, 2014 at 9:36 AM, Rachel <[email protected]> wrote: >> >> Hi David, >> >> Does TPP has its own label-free quantification program? and what is it? >> >> Thanks >> Rachel >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. > > > > > -- > Puneet Kumar Kadimi, M.Sc.-Tech (Bioinformatics) > Research Associate, Center for Agricultural Bioinformatics (CABin), > Indian Agricultural Statistics Research Institute (IASRI), > New Delhi-110012, India > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
