The translateDNA2AA.exe program uses the standard genetic code to translate nucleotides to amino acids; I don't use tblastn but would have to assume that it uses the same translation table.
On Tue, Apr 29, 2014 at 3:12 AM, Hannes Röst <[email protected]> wrote: > Hi Rachel > > sorry, I dont know enough about the TPP and these programs to answer > these questions. However, there are multiple translation tables but I > guess that most of the tools would use the canonical one. > > Maybe you should try the spctools list? > > Hannes > > On 29 April 2014 05:38, Rachel <[email protected]> wrote: > > Hi Hannes, > > > > Do you know whether the translationDNA2AA.exe program in TPP use the same > > translation as in tblastn? > > That is, if a sequence is translated by translationDNA2AA, can it be > mapped > > back with tblastn? > > If not, who is the person knows about this? > > > > Thanks, > > Rachel > > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to [email protected]. > > To post to this group, send email to [email protected]. > > Visit this group at http://groups.google.com/group/spctools-discuss. > > For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
