That's great, Robert! Thanks for including TPP in MASSyPup. Does that mean that you are also including the Comet search engine, since we bundle it with TPP? Let us know if we can help you iron out those bugs with viewing those intermediate files.
Cheers, --Luis On Sun, Mar 16, 2014 at 6:45 AM, Robert <[email protected]>wrote: > Dear colleagues, > > the TPP is now portable. The 2014/03/15 release of MASSyPup ( > http://lababi.bioprocess.org/index.php/lababi-software/78-massypup) > contains a working Petunia/TPP installation. I tested the > X!Tandem->PepXML->PeptideProphet->ProteinProphet workflow + viewing. The > test files are included. > Both, USB and DVD versions of TPP-MASSyPup, work for me on a 2Gb and a 8Gb > RAM computer. > I had to apply plenty of tweaks to get the apache2 running and the custom > compiled TPP funcional. Some comments: If a Perl script does not work, > adding '/usr/bin/perl' in the first line usually solves the problem. > There was no .password file in the release and there is no 'crypt' command > in Puppy Linux/ Precise Debian. So I disabled the Password check in > tpp_gui.pl with the comment #RW. Some intermediate .xml files do not > open, because the interface of the Viewing Utility has some wrong links (a > '/tpp/' missing in the address), but the important stuff (tandem database > search, pepXML, Peptide/ProteinProphet, viewing results) works fine. > If you plan to remaster MASSyPup yourself, you have to copy the following > files manually from /etc to /tmp/etc during the re-master process: passwd, > group (I had to edit them manually for adding the www-data user) and the > apache2 directory (which contains the Apache and TPP configuration). > Please share your experiences (also pleasant ones) and bug fixes! > > Have fun, Robert > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
