Dear Luis,
I just uploaded a new release of MASSyPup, with TPP v4.7, Petunia GUI,
X!Tandem workflow and Comet 14.01.rev0 working.
Any comments are welcome.
Best Regards,
Robert
On 14.05.2014 15:38, Luis Mendoza wrote:
That's great, Robert! Thanks for including TPP in MASSyPup.
Does that mean that you are also including the Comet search engine,
since we bundle it with TPP?
Let us know if we can help you iron out those bugs with viewing those
intermediate files.
Cheers,
--Luis
On Sun, Mar 16, 2014 at 6:45 AM, Robert <[email protected]
<mailto:[email protected]>> wrote:
Dear colleagues,
the TPP is now portable. The 2014/03/15 release of MASSyPup
(http://lababi.bioprocess.org/index.php/lababi-software/78-massypup)
contains a working Petunia/TPP installation. I tested the
X!Tandem->PepXML->PeptideProphet->ProteinProphet workflow +
viewing. The test files are included.
Both, USB and DVD versions of TPP-MASSyPup, work for me on a 2Gb
and a 8Gb RAM computer.
I had to apply plenty of tweaks to get the apache2 running and the
custom compiled TPP funcional. Some comments: If a Perl script
does not work, adding '/usr/bin/perl' in the first line usually
solves the problem.
There was no .password file in the release and there is no 'crypt'
command in Puppy Linux/ Precise Debian. So I disabled the Password
check in tpp_gui.pl <http://tpp_gui.pl> with the comment #RW. Some
intermediate .xml files do not open, because the interface of the
Viewing Utility has some wrong links (a '/tpp/' missing in the
address), but the important stuff (tandem database search, pepXML,
Peptide/ProteinProphet, viewing results) works fine.
If you plan to remaster MASSyPup yourself, you have to copy the
following files manually from /etc to /tmp/etc during the
re-master process: passwd, group (I had to edit them manually for
adding the www-data user) and the apache2 directory (which
contains the Apache and TPP configuration).
Please share your experiences (also pleasant ones) and bug fixes!
Have fun, Robert
--
You received this message because you are subscribed to the Google
Groups "spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it,
send an email to [email protected]
<mailto:[email protected]>.
To post to this group, send email to
[email protected]
<mailto:[email protected]>.
Visit this group at http://groups.google.com/group/spctools-discuss.
For more options, visit https://groups.google.com/d/optout.
--
You received this message because you are subscribed to the Google
Groups "spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send
an email to [email protected]
<mailto:[email protected]>.
To post to this group, send email to [email protected]
<mailto:[email protected]>.
Visit this group at http://groups.google.com/group/spctools-discuss.
For more options, visit https://groups.google.com/d/optout.
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/spctools-discuss.
For more options, visit https://groups.google.com/d/optout.
