I have the same question.
Hope someone can help.

On Tue, Aug 12, 2014 at 5:12 AM, Adam Oberstein <[email protected]>
wrote:

> Dear TPP team,
>
> I'm trying to automate my data analysis workflow using the binaries
> included with tpp v4.7.1 on linux. I have database search --> peptide
> prophet --> iprophet working. I'd like to export the iprot.pep.xml data to
> a spreadsheet file (.xls), as one would do manually in PepXMLViewer using
> the "Other Actions --> Export Spreadsheet" option.
>
> Can someone advise me how I might go about doing this from the command
> line or a script?
>
> Sincerely,
> Adam Oberstein
> Department of Molecular Biology
> Princeton University
>
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