Hello, There is an obscure option (as in: I just discovered it!) that might work. Try running the PepXMLViewer from the command-line like so:
PepXMLViewer.cgi -B exportSpreadsheet 1 -I <pepXMLfile> Hope this helps, --Luis On Tue, Aug 12, 2014 at 4:49 AM, 钟传奇 <[email protected]> wrote: > I have the same question. > Hope someone can help. > > > On Tue, Aug 12, 2014 at 5:12 AM, Adam Oberstein <[email protected]> > wrote: > >> Dear TPP team, >> >> I'm trying to automate my data analysis workflow using the binaries >> included with tpp v4.7.1 on linux. I have database search --> peptide >> prophet --> iprophet working. I'd like to export the iprot.pep.xml data to >> a spreadsheet file (.xls), as one would do manually in PepXMLViewer using >> the "Other Actions --> Export Spreadsheet" option. >> >> Can someone advise me how I might go about doing this from the command >> line or a script? >> >> Sincerely, >> Adam Oberstein >> Department of Molecular Biology >> Princeton University >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
