I'm stuck in a few meetings right now, but will try this out soon! Thanks for helping!
On Friday, October 24, 2014 4:27:44 PM UTC-4, Jimmy Eng wrote: > > The binary is included with the TPP distribution but I don't believe that > you can access it in the TPP's web interface. So you're going to have to > run it in a command prompt. Here's an example set of instructions that'll > hopefully work for you: > > 1. Create a directory named c:\translate > > 2. Put your transcript database in that directory. It needs to be in the > fasta format. > > 3. Copy the program to this c:\translate directory. You'll find the > program at c:\inetpub\tpp-bin\translateDNA2AA-FASTA.exe. Rename it to > simply "translate.exe" to make things easy. > > 4. Bring up a command prompt: Start Menu -> All Programs -> Accessories > -> Command Prompt > > 5. type "cd c:\translate" to go into the directory you created > > 6. assuming your transcript database is named "mydb.fasta", run the > program by typing "translate.exe mydb.fasta". > > If it runs correctly, it will create a new file with a ".new" extension. > In the example above, the file will be named "mydb.fasta.new" which will > contain a 6 frame translation of your transcripts. > > Good luck and feel free to follow-up with any questions/problems. > > - Jimmy > > > On Fri, Oct 24, 2014 at 11:09 AM, <[email protected] <javascript:>> > wrote: > >> I need to translate a transcriptome into a proteome. I see in the 4.7.1 >> release notes that the function is added, but I can't find it anywhere >> inside TPP. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
