Hi,
I run PTMProphet analysis for ipro.pep.xml, and error happened, "multiple
static mods with different masses found on aminoacid C, can not be
processed together with PTMprophet".
In fact, I just have variable mods on Oxidation (M) and phosphorylation
(STY) , and fixed mod on Carbamidomethyl (C) in the database searching.
how to fix this issue?

Thanks.

Best regards,

Chuan-Qi Zhong

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