MSGFPlus is announced as a supported search engine here <http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP#Working_with_supported_search_engines>. However, when I run PeptideProphet on MSGFPlus output, I get the following warning:
WARNING!! The discriminant function for MSGFPL is not yet complete. It is > presented here to help facilitate trial and discussion. Reliance on this > code for publishable scientific results is not recommended. > So, what's true, now? -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
