Hello, You can convert .sqt files to PepXML by using the command-line: "Sqt2XML myfile.sqt". We will add this option to the interface for the next release.
What errors do you see with your Mascot .dat files? Do note that you need to have a copy of the same database that you searched against present in a directory accessible by TPP. Cheers, --Luis On Sun, Feb 22, 2015 at 10:47 PM, Hoikeun Jeong <[email protected]> wrote: > Hi there, > > I have problems converting ~.dat and ~.sqt to pepxml at TPP. > > First, I learn convert mascot ~.dat files to ~.pepxml and running TPP. > Those ~.dat files are gotten with decoy data. But at TPP, the result files > have errors, not opened. > > Second, I have no idea convert ~.sqt files to pepxml. I selected Sequest > mode in web based TPP. But at pepxml tab, I cannot add ~.sqt files. It only > shows "`.Directory with .out files to convert to pepxml". Where can I find > ~.sqt file converter? > > Thank you > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
