Thanks Luis

But I have another problems ;

In sqt things, I got pepxml files with your suggestion and apply pepxml 
files to 'analyze peptides'.

But the results show 'Command failed' Return code : 256

In command windows, all result shows repetedly
file 1: ~name.pep.xml
Unknown file type. No file loaded.
WARNING: cannot open data file ~path. unknown in msms_run_summary tag... 
Unknown file type. No file loaded.
WARNING: cannot CORRECT data file ~path. unknown in msms_run_summary tag...


Also, in mascot ~.dat paptide analyze things repeatedly show ;

Warning: could not find scan numbers of spectrum File: name.mzXML 
Scans:1507 RT:15.8351min Charge:2 Fragmentation:cid
Set to 0000

can you reply please?

Thank you,
Hoikeun

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