ProteoWizard’s msconvert **can** convert profile to centroided. That it
didn’t for you means that either incorrect settings were applied or there
is some other glitch to be fixed.



*From:* [email protected] [mailto:
[email protected]] *On Behalf Of *Frédéric DELOLME
*Sent:* Tuesday, March 03, 2015 3:12 AM
*To:* [email protected]
*Subject:* Re: [spctools-discuss] how to convert profile data in RAW to
centroid data in mzXML?



Hi SunSun,

Did you try to check the "Centroid all scans (MS1 and MS2) -- meaningful
only if data was acquired in profile mode" in the TPP Conversions options ?

Fred

Le 03/03/2015 11:34, zeyu sun a écrit :

Hi,

I'm wondering if there is any tools can convert profile data in RAW to
centroid data in mzXML? I have tried ProteoWizard, but it didn't change
profile data to centroid data. I current don't have access to Xcailbur.



thanks!



SunSun

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