Thanks Miguel,

I've added these in an have confirmed some joins but not others.

Robert

On 4 Mar 2015, at 11:49 am, zeyu sun <[email protected]> wrote:

> Thank you Eric, I just found out the Peak picking filter in msconvert will 
> centroid the data. I guess the problem is solved!
> 
> thank you all!
> 
> SunSun
> 
> On Tuesday, March 3, 2015 at 11:56:00 PM UTC+8, Eric Deutsch wrote:
> ProteoWizard’s msconvert *can* convert profile to centroided. That it didn’t 
> for you means that either incorrect settings were applied or there is some 
> other glitch to be fixed.
> 
>  
> From: [email protected] [mailto:[email protected]] On 
> Behalf Of Frédéric DELOLME
> Sent: Tuesday, March 03, 2015 3:12 AM
> To: [email protected]
> Subject: Re: [spctools-discuss] how to convert profile data in RAW to 
> centroid data in mzXML?
> 
>  
> Hi SunSun,
> 
> Did you try to check the "Centroid all scans (MS1 and MS2) -- meaningful only 
> if data was acquired in profile mode" in the TPP Conversions options ?
> 
> Fred
> 
> Le 03/03/2015 11:34, zeyu sun a écrit :
> 
> Hi, 
> 
> I'm wondering if there is any tools can convert profile data in RAW to 
> centroid data in mzXML? I have tried ProteoWizard, but it didn't change 
> profile data to centroid data. I current don't have access to Xcailbur. 
> 
>  
> thanks!
> 
>  
> SunSun
> 
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