Hello,

Q3ProteinRatioParser is not part of the Windows installer for current and 
semi-recent releases of the TPP. I'm not sure if it used to be included in 
older versions, but it's posted as a separate download for version 4.4.0:

http://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v4.4%20%28vuvuzela%29%20rev%200/

It's still in the SVN source tree 
(trans_proteomic_pipeline\src\Quantitation\Q3\Q3ProteinRatioParser), though 
there's no recent active development. Does anyone know if this is an 
intentional omission from the Windows installer? Is the intent that 
potential users should compile their own copies?

Thanks,
Josh

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