Thank you so much. It is high resolution data. it is the first time I use TPP and Comet, and I just do this under the guidance of the article, the parameter file is dowloaded from PRIDE database and the data set identifier is PXD001126.
fragment_bin_tol = 0.1 use_sparse_matrix = 0 spectrum_batch_size = 5000 I perform TPP on win7(64bit) with 16G memory... 在 2015年4月15日星期三 UTC+8下午1:08:02，Jimmy Eng写道： > > Is this high-res MS/MS data? If so, what are your settings for the > following Comet search parameters? > > fragment_bin_tol > use_sparse_matrix > spectrum_batch_size > > And how much memory (RAM) does your computer have? > > - Jimmy > > > On Tue, Apr 14, 2015 at 7:47 PM, c qin <[email protected] <javascript:>> > wrote: > >> Thanks for your attention >> now I can kill and delete my jobs,but when I start an other new job,it >> seems to be dead again,and the output file size stop being increased. >> I`m sure it is not finished because the output file does not reach >> expected size like my reference artical showed... >> Do you encounter this problem？ >> >> >> 在 2015年4月13日星期一 UTC+8下午12:35:43，andyzcq写道： >>> >>> Hi, I came across this issue and solved it in the following way. >>> Find the TPP username folder (normally should >>> be C:\inetpub\tpp-bin\users\guest), and delete the file the name of >>> which contains the date of task. >>> Note: do not delete .jobs and .password files. >>> Hope it helps. >>> >>> On Sun, Apr 12, 2015 at 3:57 PM, c qin <[email protected]> wrote: >>> >>>> >>>> *Hello,* >>>> >>>> Can I ask a question about TPP(Trans Proteomic Pipeline)? >>>> >>>> I run a job on the web of TPP several days ago,and it is running in >>>> Database Search tab of Analysis Pipeline (Comet).However, until now,it is >>>> still in the running…… >>>> My data size is about 3GB,and I do not feel it is too big. When I click >>>> the “kill job” button,a messages show on orange window and tell that >>>> “Unable >>>> to kill command 3340! ()” >>>> I have no idea what should I do to finish(continue or kill) my job... >>>> >>>> >>>> Thank you >>>> c qin >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at http://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
