The Mascot format, Mascot generic file or MGF, represents spectra. The FASTA format is used to represent sequences. They are two different things and it doesn't make sense to want to convert one to the other. Figure out what you really need and possibly follow-up here.
On Wed, Apr 29, 2015 at 12:16 PM, Leandro de Mattos <mattos...@gmail.com> wrote: > > Dear colleagues of bioinformatics, > > Anyone know some way to convert mascote format (mass) to Fasta outside of > program Maxquant(www.maxquant.org), because such conversion is not > specified. > > the Mascot generic formate is a plain text (ASCII) file containing peak > list information and contain a list of peptide mass values, one per line, > optionally followed by white space and a peak area or intensity value. > > ###FS: #m/z: 339.500011 #charge 3 > ###MaxRes:#m/z: 0.000000 #charge-128 > ###MS: 1610/1612/1615/ > ###MSMS: 1611/1613/1616/ > > BEGIN IONS > TITLE= Cmpd 2, +MSn(339.500000), 18.68 min > PEPMASS=339.5000114 8486 > CHARGE=3+ > 267.1157527 136 > 388.2284896 64 > 489.2795900 158 > 600.3089972 76 > 618.3214060 218 > > END IONS > > Thanks for any suggestion. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
