On that page you have to give it pepXML files that have not been processed with PeptideProphet yet. According to the error message. It appears you gave it a file already containing PeptideProphet results:
running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "interact.ipro.pep.xml" -L"7"" Skipping file interact.ipro.pep.xml, which already contains peptideprophet results ... processed altogether 0 results ERROR: output file created, c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml, appears incomplete. Please check the input files for completeness. On Mon, Jun 1, 2015 at 1:16 AM, Xabier Martinez De Morentin < [email protected]> wrote: > Same error here :( > > El jueves, 17 de julio de 2014, 0:03:51 (UTC+2), Shadab Ahmad escribió: >> >> Hi, >> I am using TPP 4.7.1 and trying to analyse demo SILAC data but fail >> >> detail: >> >> c:\Inetpub\tpp-bin\xinteract (TPP v4.7 POLAR VORTEX rev 1, Build >> 201405141849 (MinGW)) >> PPM mode in Accurate Mass Model ... >> >> running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" >> "interact.ipro.pep.xml" -L"7"" >> Skipping file interact.ipro.pep.xml, which already contains peptideprophet >> results ... >> processed altogether 0 results >> ERROR: output file created, >> c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml, appears incomplete. >> Please check the input files for completeness. >> INFO: Results written to file: >> c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml >> command completed in 1 sec >> >> running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" >> command completed in 0 sec >> >> No single database specified (by -D option or in .pep.xml file). >> RefreshParser skipped. >> >> running: "C:/Inetpub/tpp-bin/ASAPRatioPeptideParser "interact.pep.xml" -lKR >> -r0.05 -mM147.035K136.10916R166.10941" >> Error: file update failed (did not find closing tag >> "</msms_pipeline_analysis>"), check file interact.pep.xml.tmp.a07516 for >> completeness >> error: no ASAPRatio data written to file interact.pep.xml >> command completed in 4 sec >> >> running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml" >> c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml(1) : error 3: XML Parsing >> error.no element foundat l:1, c:0 >> >> This application has requested the Runtime to terminate it in an unusual way. >> Please contact the application's support team for more information. >> >> command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml" failed: Unknown error >> >> command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> c:/Inetpub/wwwroot/ISB/data/demo3/interact.pep.xml" exited with non-zero >> exit code: 255 >> QUIT - the job is incomplete >> >> command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -PPM -nP >> -A-lKR-r0.05-mM147.035K136.10916R166.10941 interact.ipro.pep.xml" failed: >> Unknown error >> >> *Command FAILED* >> RETURN CODE:65280 >> Kindly Help >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
